Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017923.1 Corchorus olitorius cultivar O-4 contig17956, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21429

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
615--644
16
1.9
15
93
6
51
36
3
13
46
1.60
7047--7078
2
16.0
2
93
0
55
46
0
3
50
1.17
8156--8207
17
2.9
17
85
5
68
80
0
17
1
0.80
8155--8201
19
2.5
19
82
6
60
78
0
19
2
0.85
8155--8208
9
5.9
9
76
10
56
81
0
16
1
0.78
9331--9373
22
2.0
22
85
0
59
25
16
9
48
1.75
9353--10061
35
20.4
35
80
6
663
17
20
21
40
1.91
9353--10061
71
10.2
70
82
6
699
17
20
21
40
1.91
9353--10061
106
6.8
105
81
6
706
17
20
21
40
1.91
9903--9955
25
2.1
25
89
0
79
13
18
26
41
1.87
9866--9983
60
2.0
61
87
1
175
16
19
21
42
1.89
9795--10050
131
1.9
132
82
6
315
17
20
22
39
1.92
9938--10132
71
2.7
71
83
2
212
18
18
24
38
1.93
10612--11035
40
10.6
40
77
7
238
33
22
27
16
1.95
10849--10993
78
1.9
78
89
0
227
31
21
30
17
1.96
10963--11055
41
2.3
42
81
10
113
41
22
25
9
1.84
11095--11391
43
6.7
43
85
7
373
35
18
26
19
1.95
11095--11390
132
2.2
132
89
3
434
35
18
26
19
1.95
11095--11404
89
3.5
87
85
7
376
37
17
25
19
1.94
14530--14688
84
1.9
84
94
0
282
50
3
10
35
1.55
14809--14996
88
2.1
88
84
8
240
53
1
8
36
1.41
15348--15380
17
1.9
17
93
0
57
18
24
27
30
1.98

Tables:   1

The End!