Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017927.1 Corchorus olitorius cultivar O-4 contig17960, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 17453
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30


Found at i:4461 original size:21 final size:21

Alignment explanation


    Indices: 4437--4477  Score: 55
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       4427 GGCGCCCACA

                         *       
       4437 TGGTTGCCTTGAGCACCCAGG
          1 TGGTTGCCTTGAGAACCCAGG

                 **             
       4458 TGGTTTTCTTGAGAACCCAG
          1 TGGTTGCCTTGAGAACCCAG

       4478 CTGGGCAGTG


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.17, C:0.24, G:0.29, T:0.29


Consensus pattern (21 bp):   
TGGTTGCCTTGAGAACCCAGG
Done.