Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017928.1 Corchorus olitorius cultivar O-4 contig17961, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22555

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1020--1055
19
1.9
18
88
5
54
27
22
8
41
1.82
2570--2626
30
1.9
29
89
10
89
59
5
14
21
1.54
7713--7748
19
1.9
18
88
5
54
27
22
8
41
1.82
9270--9314
21
2.1
21
83
0
54
15
17
31
35
1.92
10598--10647
24
2.1
24
92
0
82
20
18
22
40
1.92
14165--14268
36
2.8
38
86
7
142
43
14
18
24
1.87
14339--14833
47
10.4
47
87
3
713
46
5
20
27
1.73
14736--14919
54
3.5
53
84
6
225
44
5
17
32
1.73
14501--14919
47
8.5
52
85
6
222
45
5
18
30
1.73
14791--14939
49
2.8
53
82
13
193
44
4
18
32
1.70
17860--17899
21
1.9
21
89
0
62
22
0
50
27
1.50
18144--18189
24
1.9
24
95
0
83
19
30
23
26
1.98
18311--18456
32
4.5
32
92
1
220
26
16
25
32
1.96

Tables:   1

The End!