Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017931.1 Corchorus olitorius cultivar O-4 contig17964, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75874

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
120--181
32
2.0
31
90
3
97
29
9
19
41
1.83
3795--3988
101
1.9
100
85
3
255
38
15
15
29
1.89
4579--4765
103
1.8
104
95
1
340
48
10
17
23
1.79
6393--6737
179
1.9
179
94
0
609
38
13
7
40
1.72
7193--7262
36
1.9
36
94
0
122
22
10
7
60
1.53
8039--8127
45
2.0
42
89
6
133
35
4
7
51
1.51
11005--11186
37
4.8
37
75
14
201
19
1
24
54
1.50
11001--11222
114
2.0
111
96
2
408
20
1
25
52
1.54
11267--11438
57
3.1
57
80
9
235
17
1
26
54
1.52
11607--11674
30
2.3
30
94
0
118
52
20
5
20
1.67
12032--12075
18
2.4
18
96
0
79
40
22
15
20
1.90
14669--14999
161
2.0
164
88
7
497
41
21
12
24
1.88
21918--21943
13
2.0
13
100
0
52
0
0
92
7
0.39
29692--29742
3
17.0
3
100
0
102
66
0
0
33
0.92
31128--31156
2
14.5
2
100
0
58
51
0
0
48
1.00
37688--37723
19
1.9
18
88
5
54
27
22
8
41
1.82
40616--40680
5
11.5
6
87
9
77
0
0
16
83
0.66
40616--40680
28
2.3
29
86
7
98
0
0
16
83
0.66
41369--41412
22
2.0
23
86
4
63
15
6
6
70
1.31
44173--44218
23
2.0
24
86
4
67
32
6
30
30
1.83
48739--49053
36
8.8
36
95
0
533
28
17
21
31
1.97
49453--49543
28
3.2
28
92
0
146
16
16
25
41
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51682--51750
30
2.4
30
81
16
83
33
28
7
30
1.84
55320--55558
118
2.0
123
82
6
301
36
12
11
39
1.80
56142--56533
121
3.2
120
92
2
642
37
14
12
35
1.84
59604--59891
146
2.0
146
97
0
549
33
28
21
15
1.95
61222--61289
28
2.5
28
76
11
68
41
11
19
27
1.86
74698--74796
27
3.7
27
78
9
112
19
15
23
42
1.88
75472--75874
40
10.1
40
90
1
605
20
28
19
32
1.96

Tables:   1

The End!