Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017933.1 Corchorus olitorius cultivar O-4 contig17966, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21442

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3072--3154
41
2.0
42
85
2
114
39
10
1
48
1.46
4619--4674
11
4.8
12
84
8
62
66
1
0
32
1.03
8450--8491
21
2.0
21
95
0
75
19
19
11
50
1.78
8455--8497
21
2.0
21
95
0
77
18
23
9
48
1.76
9315--9488
59
2.8
59
84
11
231
30
14
29
25
1.95
9173--9627
203
2.3
197
92
4
793
29
15
28
26
1.96
9383--9698
139
2.3
138
96
1
582
29
15
28
25
1.96
13652--13948
8
41.7
7
68
20
88
25
8
0
65
1.24
13665--13699
14
2.5
14
85
0
52
20
2
0
77
0.90
13722--13957
4
61.5
4
66
16
90
25
8
0
65
1.24
13722--13939
43
5.1
43
79
13
220
26
9
0
64
1.27
13720--13901
36
4.8
36
77
19
181
26
10
0
63
1.27
13720--13907
79
2.4
75
87
7
270
25
10
0
63
1.26
13906--13948
19
2.3
19
83
0
59
27
2
2
67
1.15
13639--13957
11
28.8
11
67
19
132
25
8
0
66
1.22
13704--13996
8
37.8
8
67
17
68
25
10
0
63
1.31
18450--18996
54
10.1
54
85
1
605
26
15
20
37
1.93
18947--19335
53
7.3
53
78
7
349
28
19
21
31
1.97
18936--19335
107
3.7
105
81
6
419
28
18
21
31
1.97
19311--20111
35
22.7
35
89
3
1135
28
12
18
39
1.88

Tables:   1

The End!