Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017936.1 Corchorus olitorius cultivar O-4 contig17969, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18382

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
381--441
27
2.3
27
82
0
68
29
22
13
34
1.92
3847--3996
53
2.9
52
94
2
264
34
19
16
30
1.94
5339--5441
53
2.0
52
82
1
125
39
18
12
29
1.87
5465--5489
7
3.6
7
100
0
50
24
0
12
64
1.27
10881--10937
15
3.6
16
77
13
55
42
33
12
12
1.80
11629--11740
52
2.2
52
86
0
152
41
18
16
22
1.90
11835--11882
8
5.9
8
83
11
62
52
2
14
31
1.54
11833--11897
24
2.7
24
83
7
78
56
1
13
27
1.46
11833--11891
16
3.6
16
81
6
57
54
1
13
30
1.49
11923--12029
22
4.9
22
83
15
150
44
5
20
28
1.74
11923--12029
43
2.5
44
92
6
182
44
5
20
28
1.74
11968--12026
8
7.9
8
80
14
63
44
5
22
28
1.74
11933--12005
14
5.1
14
71
21
62
45
5
19
30
1.73
13822--13861
20
2.0
20
90
9
64
70
5
12
12
1.33
14327--14409
42
1.9
46
83
13
115
39
4
1
54
1.30
16597--16639
22
2.0
22
90
0
68
60
4
9
25
1.47
18136--18166
16
1.9
16
93
0
53
35
9
0
54
1.33

Tables:   1

The End!