Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017940.1 Corchorus olitorius cultivar O-4 contig17973, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1712
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28


Found at i:544 original size:12 final size:13

Alignment explanation


    Indices: 516--560  Score: 54
    Period size: 13  Copynumber: 3.3  Consensus size: 13

        506 TCATGAACCC

                         
        516 AAAATAATTTAAT
          1 AAAATAATTTAAT

                   *      *
        529 AAAATCATTTATAAA
          1 AAAAT-AATT-TAAT

                         
        544 AAAATAATTTAAT
          1 AAAATAATTTAAT

                
        557 AAAA
          1 AAAA

        561 CAGTATAATA


Statistics
Matches: 26,  Mismatches: 4, Indels: 4
        0.76            0.12        0.12

Matches are distributed among these distances:
  13   12  0.46
  14    6  0.23
  15    8  0.31

ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33


Consensus pattern (13 bp):   
AAAATAATTTAAT
Done.