Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017941.1 Corchorus olitorius cultivar O-4 contig17974, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27217

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
558--620
27
2.3
26
81
7
72
34
20
14
30
1.92
1423--1461
20
2.0
20
84
0
51
12
5
12
69
1.35
7977--8016
21
1.9
21
89
0
62
25
35
22
17
1.95
10549--10688
35
4.0
35
87
2
183
12
37
40
10
1.77
10703--10733
9
3.4
9
95
0
53
0
41
0
58
0.98
14621--14684
32
2.0
32
100
0
128
12
12
15
59
1.61
16622--16773
76
2.0
76
81
7
175
17
29
28
24
1.97
18663--18693
16
1.9
16
100
0
62
67
12
6
12
1.40
20167--20221
21
2.9
19
81
10
60
20
0
50
29
1.48
23494--23560
17
4.1
16
72
16
57
1
20
0
77
0.85
23528--23568
21
1.9
22
85
5
57
0
14
2
82
0.76
23619--23757
51
2.7
51
89
2
217
13
38
37
10
1.80

Tables:   1

The End!