Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017945.1 Corchorus olitorius cultivar O-4 contig17978, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2404
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33


Found at i:2366 original size:13 final size:13

Alignment explanation


    Indices: 2348--2372  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       2338 TTGCCAAAAA

                         
       2348 AATAATTTTAAGC
          1 AATAATTTTAAGC

                        
       2361 AATAATTTTAAG
          1 AATAATTTTAAG

       2373 GTCGTAAAAA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.48, C:0.04, G:0.08, T:0.40


Consensus pattern (13 bp):   
AATAATTTTAAGC
Done.