Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017948.1 Corchorus olitorius cultivar O-4 contig17981, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4424
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30


Found at i:2687 original size:21 final size:20

Alignment explanation


    Indices: 2644--2699  Score: 69
    Period size: 21  Copynumber: 2.8  Consensus size: 20

       2634 GTTTAGCAAT

                                
       2644 TGTACAGATGAGATT-ACAC
          1 TGTACAGATGAGATTAACAC

                     *        *  
       2663 TGTACAGATTAGATTAAATAC
          1 TGTACAGATGAGATT-AACAC

                   *        
       2684 TGTACAGCTGAGATTA
          1 TGTACAGATGAGATTA

       2700 TTAGAGCAAC


Statistics
Matches: 31,  Mismatches: 4, Indels: 3
        0.82            0.11        0.08

Matches are distributed among these distances:
  19   14  0.45
  20    1  0.03
  21   16  0.52

ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30


Consensus pattern (20 bp):   
TGTACAGATGAGATTAACAC

Found at i:2777 original size:19 final size:19

Alignment explanation


    Indices: 2750--2786  Score: 65
    Period size: 19  Copynumber: 1.9  Consensus size: 19

       2740 TTTGGGCCCA

                               
       2750 AAACAGTGGTGAAACGGTC
          1 AAACAGTGGTGAAACGGTC

                *             
       2769 AAACGGTGGTGAAACGGT
          1 AAACAGTGGTGAAACGGT

       2787 TACAGATAAG


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  19   17  1.00

ACGTcount: A:0.35, C:0.14, G:0.35, T:0.16


Consensus pattern (19 bp):   
AAACAGTGGTGAAACGGTC
Done.