Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017958.1 Corchorus olitorius cultivar O-4 contig17991, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7155

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
381--472
27
3.3
27
86
6
121
34
22
13
29
1.92
381--469
30
3.1
30
85
7
114
33
23
13
29
1.93
472--503
16
2.0
16
93
0
55
46
12
3
37
1.57
549--618
26
2.7
27
82
8
83
30
15
20
34
1.93
518--1051
86
6.3
83
73
19
280
30
14
21
33
1.93
552--962
51
7.5
51
68
24
198
31
13
20
34
1.92
548--681
63
2.1
63
92
1
223
31
14
17
36
1.90
617--690
25
2.9
25
78
8
78
32
12
18
36
1.88
698--962
25
10.0
27
73
16
112
31
13
21
33
1.92
701--876
25
7.0
25
74
12
155
31
12
21
34
1.91
854--997
35
3.7
35
70
25
117
29
13
22
33
1.93
1010--1088
17
4.5
17
65
20
54
30
15
24
30
1.95
973--1152
54
3.4
54
90
3
269
30
15
22
32
1.94
1167--1218
25
2.1
25
92
0
86
32
11
19
36
1.87
1337--2086
331
2.3
332
79
5
743
35
13
14
36
1.86
2498--4988
331
7.6
330
82
5
2884
33
15
15
35
1.89
2519--4927
661
3.7
659
89
2
3539
33
15
15
35
1.89
6648--6873
62
3.6
62
94
1
391
35
21
39
3
1.71
6874--6939
34
1.9
34
100
0
132
46
18
31
3
1.64

Tables:   1

The End!