Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017963.1 Corchorus olitorius cultivar O-4 contig17996, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13734
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:2652 original size:16 final size:16

Alignment explanation


    Indices: 2628--2661  Score: 50
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       2618 ACAAATTACA

                *    *      
       2628 TGAGGTCTAGGTAGGC
          1 TGAGATCTAAGTAGGC

                            
       2644 TGAGATCTAAGTAGGC
          1 TGAGATCTAAGTAGGC

              
       2660 TG
          1 TG

       2662 GAACTAAAAG


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.24, C:0.12, G:0.38, T:0.26


Consensus pattern (16 bp):   
TGAGATCTAAGTAGGC
Done.