Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017966.1 Corchorus olitorius cultivar O-4 contig17999, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115026

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7835--8059
75
3.1
75
83
10
297
12
25
19
41
1.87
7924--8065
66
2.2
66
89
0
221
11
26
20
41
1.87
12511--12545
14
2.7
13
87
12
54
45
14
0
40
1.45
12517--12547
7
4.3
7
95
4
53
45
12
0
41
1.42
15521--15553
15
2.2
15
94
0
57
12
39
9
39
1.74
19334--19407
31
2.4
31
93
0
121
18
29
28
22
1.98
24489--24522
18
1.9
17
88
5
50
44
0
35
20
1.52
26563--26619
19
2.9
19
80
10
69
36
21
7
35
1.80
33579--33609
11
2.8
11
100
0
62
9
35
0
54
1.33
41417--41465
20
2.4
20
86
3
62
10
36
38
14
1.80
50444--50519
34
2.2
34
83
0
89
40
17
15
26
1.89
56860--57113
132
1.9
132
92
0
427
19
33
24
22
1.97
60080--60104
6
4.2
6
100
0
50
0
0
84
16
0.63
82267--82298
2
16.0
2
100
0
64
50
0
0
50
1.00
82488--82519
2
16.0
2
100
0
64
50
0
0
50
1.00
84211--84243
17
1.9
17
88
11
50
12
27
9
51
1.69
100491--100747
49
5.1
49
83
7
334
31
26
17
24
1.97
100491--100747
98
2.5
103
88
5
371
31
26
17
24
1.97
100628--100743
57
2.1
56
88
1
169
31
28
13
26
1.94
106918--106993
38
2.0
38
100
0
152
31
10
18
39
1.85
107005--109675
332
8.1
327
82
5
3171
35
17
14
32
1.90
107005--109675
663
4.0
660
82
5
3216
35
17
14
32
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107005--109675
995
2.7
986
90
2
4152
35
17
14
32
1.90
109741--114968
336
15.8
334
83
5
5155
33
17
15
33
1.91
109672--114968
671
8.0
667
84
5
5283
33
17
15
33
1.91

Tables:   1

The End!