Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017970.1 Corchorus olitorius cultivar O-4 contig18003, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81126

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2257--2293
19
1.9
19
94
0
65
40
13
16
29
1.86
2993--3031
17
2.3
17
100
0
78
48
5
10
35
1.59
4198--4398
104
1.9
104
92
0
339
26
23
18
30
1.98
5959--5987
10
3.0
10
95
5
51
0
31
10
58
1.31
28239--28300
28
2.2
28
100
0
124
9
19
24
46
1.79
31246--31321
22
3.5
22
87
3
91
36
21
10
31
1.87
31244--31334
44
2.1
44
81
8
105
37
18
9
34
1.84
31246--31334
22
4.1
21
84
5
90
37
19
10
33
1.85
31398--31591
22
8.9
22
71
11
76
35
15
10
38
1.83
31480--31585
44
2.4
44
82
1
124
34
14
10
40
1.80
36336--36978
317
2.0
317
98
0
1232
39
18
13
28
1.88
53983--54059
29
2.6
30
83
2
102
15
27
27
29
1.96
56877--56901
13
1.9
13
100
0
50
48
8
12
32
1.69
65334--65363
7
4.3
7
100
0
60
13
30
26
30
1.94
72431--72520
35
2.6
35
90
0
144
30
11
25
33
1.90
72720--72794
29
2.6
29
100
0
150
29
14
6
49
1.69
75406--75472
29
2.2
29
84
10
82
37
5
14
41
1.71
76254--76311
26
2.3
26
88
5
84
48
13
0
37
1.43
79464--81124
331
5.0
332
89
2
2512
35
16
15
32
1.90
79464--81124
671
2.5
668
92
2
2646
35
16
15
32
1.90

Tables:   1

The End!