Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017971.1 Corchorus olitorius cultivar O-4 contig18004, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50496

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1836
331
5.5
331
89
3
2861
35
16
15
33
1.90
1--1836
671
2.8
661
88
4
2867
35
16
15
33
1.90
1360--2931
536
3.0
532
84
4
1939
35
16
12
35
1.87
1966--5507
855
4.2
852
87
3
5072
35
17
13
34
1.88
3902--4311
205
2.0
201
88
4
597
36
17
10
35
1.85
7399--7431
16
2.1
16
100
0
66
57
24
6
12
1.57
10055--10103
22
2.2
23
82
10
57
34
6
22
36
1.79
13487--13520
16
2.1
16
100
0
68
23
23
17
35
1.95
40195--40246
18
2.7
19
83
16
63
0
34
1
63
1.06
50409--50482
13
6.5
13
67
25
51
40
4
51
4
1.40
50409--50474
22
3.0
22
97
2
125
39
4
51
4
1.43

Tables:   1

The End!