Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017976.1 Corchorus olitorius cultivar O-4 contig18009, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4177

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
770--1050
31
9.8
29
82
11
264
33
11
19
35
1.88
799--1155
25
13.2
25
71
18
177
31
12
20
35
1.90
770--1026
60
4.4
60
78
14
243
34
12
19
34
1.88
770--1069
112
2.6
112
81
11
317
33
12
19
35
1.88
826--1056
91
2.6
88
85
5
331
33
12
19
34
1.89
2092--2133
20
2.1
20
100
0
84
26
14
14
45
1.83
2207--2264
29
2.0
28
96
3
107
50
15
0
34
1.45
2757--2816
7
9.1
7
91
8
92
15
0
46
38
1.45
2759--2823
6
10.2
6
88
8
85
16
0
46
36
1.48
2757--2823
13
5.2
13
89
8
93
16
0
46
37
1.47
2757--2816
20
3.0
20
97
2
113
15
0
46
38
1.45
3741--3947
62
3.4
62
94
2
373
34
21
39
3
1.72
3925--4012
34
2.7
33
92
3
142
47
18
29
4
1.68
4113--4176
2
32.0
2
100
0
128
50
0
50
0
1.00

Tables:   1

The End!