genome.fa.s17978.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017978.1 Corchorus olitorius cultivar O-4 contig18011, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  232493

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1670--1702	16	2.1	16	100	0	66	30	39	0	30	1.57
2054--2103	25	2.0	25	84	7	66	66	8	20	6	1.40
11886--11931	4	12.2	4	82	13	53	80	0	19	0	0.71
11888--11927	14	3.1	14	86	13	59	82	0	17	0	0.67
17932--17961	14	2.1	14	93	0	51	23	20	10	46	1.80
49276--49305	3	9.7	3	92	7	51	3	30	0	66	1.07
68631--68656	6	4.3	6	100	0	52	69	0	15	15	1.20
69759--69797	16	2.4	16	86	0	51	7	25	0	66	1.18
71128--71152	2	12.5	2	100	0	50	48	0	0	52	1.00
72008--72075	28	2.5	28	86	9	95	38	11	25	25	1.89
93717--93835	21	5.7	20	79	2	76	20	39	16	23	1.92
93706--93835	42	3.1	41	76	4	107	20	40	16	23	1.92
93804--93847	21	2.1	21	82	0	52	25	43	13	18	1.86
93942--94045	21	5.0	21	82	2	111	25	41	9	23	1.84
93915--94042	42	3.0	42	80	0	139	26	42	10	21	1.84
93921--94090	21	8.1	21	81	5	105	27	41	10	21	1.85
94011--94175	42	3.9	42	78	7	138	25	41	8	24	1.83
94017--94175	21	7.6	21	78	6	110	25	42	8	23	1.81
94072--94238	63	2.6	62	74	3	163	23	44	7	24	1.79
94032--94238	42	4.9	42	78	1	155	23	43	8	24	1.81
94107--94204	21	4.7	21	76	0	88	24	43	8	23	1.80
94177--94239	21	3.0	21	76	0	72	20	44	9	25	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94245--94306	21	3.0	21	82	0	70	30	32	11	25	1.91
94571--94611	21	2.0	21	85	0	55	29	39	0	31	1.57
98210--98237	1	28.0	1	100	0	56	0	0	0	100	0.00
105910--105962	12	4.4	12	95	0	88	7	18	56	16	1.63
118197--118228	15	2.1	15	94	0	55	87	0	12	0	0.54
118201--118226	12	2.2	12	100	0	52	92	0	7	0	0.39
135522--135560	14	2.8	14	92	0	60	28	0	0	71	0.86
135526--135569	15	3.0	15	86	3	54	22	2	0	75	0.92
135295--135779	265	1.8	265	95	0	871	37	7	15	39	1.76
135926--135958	12	2.6	13	85	9	50	69	18	0	12	1.18
136562--136730	31	5.6	31	64	10	107	32	18	21	27	1.96
136566--136724	60	2.7	60	88	0	228	34	17	20	27	1.95
136767--136927	60	2.7	60	86	5	236	29	18	18	34	1.94
136802--136900	29	3.3	29	63	10	74	31	17	16	35	1.92
155842--156780	338	2.8	332	83	5	1196	31	15	17	36	1.90
156677--156903	123	1.8	123	87	0	337	29	16	15	38	1.90
156804--158048	332	3.8	331	85	3	1639	32	13	16	36	1.88
158670--159627	333	2.9	333	88	1	1366	32	13	17	36	1.89
159626--163265	331	10.9	333	86	4	5010	32	15	17	35	1.90
159626--163265	1000	3.6	995	87	3	5188	32	15	17	35	1.90
163015--163509	244	2.0	244	91	0	792	33	12	16	36	1.87
163259--166090	334	8.5	333	85	4	3625	32	14	17	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
171869--171949	32	2.5	32	89	0	117	29	13	12	44	1.80
189572--189597	4	6.5	4	100	0	52	53	0	0	46	1.00
190216--190270	26	2.1	26	96	0	101	27	40	20	12	1.88
203243--203275	16	2.1	16	100	0	66	12	6	24	57	1.57
204812--205066	132	1.9	132	92	1	431	20	32	23	24	1.98
207933--207994	7	8.9	7	96	0	115	30	0	27	41	1.56
211960--211990	15	2.1	14	94	5	53	41	0	19	38	1.51
212687--212717	2	15.5	2	100	0	62	48	0	0	51	1.00
217761--217793	6	5.5	6	96	0	57	27	0	36	36	1.57
223812--223837	6	4.3	6	100	0	52	15	65	0	19	1.27
225093--225122	7	4.3	7	91	0	51	26	30	0	43	1.55

Tables:   1

The End!