Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01017979.1 Corchorus olitorius cultivar O-4 contig18012, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53359
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Found at i:3456 original size:13 final size:13
Alignment explanation
Indices: 3438--3464 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
3428 CAATTGGGGA
3438 GAAGAGAAGGGTT
1 GAAGAGAAGGGTT
3451 GAAGAGAAGGGTT
1 GAAGAGAAGGGTT
3464 G
1 G
3465 TAGTTTCTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.48, T:0.15
Consensus pattern (13 bp):
GAAGAGAAGGGTT
Found at i:16374 original size:20 final size:20
Alignment explanation
Indices: 16349--16386 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
16339 TTAAAATTAA
16349 ATACCCAAGAAAAAAGAAAG
1 ATACCCAAGAAAAAAGAAAG
*
16369 ATACCCAAGAAAGAAGAA
1 ATACCCAAGAAAAAAGAA
16387 GAAGAAGAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.63, C:0.16, G:0.16, T:0.05
Consensus pattern (20 bp):
ATACCCAAGAAAAAAGAAAG
Found at i:16387 original size:3 final size:3
Alignment explanation
Indices: 16379--16406 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
16369 ATACCCAAGA
16379 AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG A
16407 GAGATATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:18438 original size:177 final size:178
Alignment explanation
Indices: 18131--18487 Score: 459
Period size: 177 Copynumber: 2.0 Consensus size: 178
18121 ACCAATTTTT
* **
18131 GCTTCTTCAGTATCCCTTGCTTGCCTTCAAGATCCACCACCATTGAAGGTGCACGTTTTTTATCC
1 GCTTCTTCAGTATCCCTTGCTTGCCTTCAAGAT-C-CCACCATTGAAGGAGCACGACTTTTATCC
*
18196 TCCTTCAATGGAAGTTGATTATTTGCCAAATCCCTCCCATTTGCCTTTGGTTGAAAGACTTCTTT
64 TCCTTCAATGGAAGTTGATTATTTGCCAAATCCCTCCCATTTGCCTCTGGTTGAAAGACTTCTTT
* * *
18261 CTCACCATTGGCTACCTT-TGTTCCTTCTCCAAGGACAACATCCATCATTG
129 CTCAACATTAGCTA-CTTCTGTTCCTCCTCCAAGGACAACATCCATCATTG
* * * * *
18311 GCTTCTTCAGTATCCCTTGCTTGGCTTCAGGGT-CCACTATTGAAGGAGCACGACTTTTATCCTT
1 GCTTCTTCAGTATCCCTTGCTTGCCTTCAAGATCCCACCATTGAAGGAGCACGACTTTTATCCTC
* * * ** * * *
18375 CTTCATTGGACGTTGATTATTTTCCAAAAT-TTTCTCATTTGCCTCTGGTTGCAAGAGTTCTTTC
66 CTTCAATGGAAGTTGATTATTTGCC-AAATCCCTCCCATTTGCCTCTGGTTGAAAGACTTCTTTC
* *
18439 TCAACATTAGCTATTTCTGTTCCTCCTCCAAGGACACCATCCATCATTG
130 TCAACATTAGCTACTTCTGTTCCTCCTCCAAGGACAACATCCATCATTG
18488 TTTCTAAAAT
Statistics
Matches: 153, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
176 2 0.01
177 117 0.76
178 4 0.03
180 30 0.20
ACGTcount: A:0.20, C:0.27, G:0.15, T:0.37
Consensus pattern (178 bp):
GCTTCTTCAGTATCCCTTGCTTGCCTTCAAGATCCCACCATTGAAGGAGCACGACTTTTATCCTC
CTTCAATGGAAGTTGATTATTTGCCAAATCCCTCCCATTTGCCTCTGGTTGAAAGACTTCTTTCT
CAACATTAGCTACTTCTGTTCCTCCTCCAAGGACAACATCCATCATTG
Found at i:27256 original size:31 final size:31
Alignment explanation
Indices: 27221--27282 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
27211 AGCTGAGAAA
27221 ACTTTTTCTATATATATCCTGCTGTCCAATT
1 ACTTTTTCTATATATATCCTGCTGTCCAATT
27252 ACTTTTTCTATATATATCCTGCTGTCCAATT
1 ACTTTTTCTATATATATCCTGCTGTCCAATT
27283 TGGTCTTTCC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.06, T:0.48
Consensus pattern (31 bp):
ACTTTTTCTATATATATCCTGCTGTCCAATT
Found at i:28405 original size:6 final size:6
Alignment explanation
Indices: 28394--28420 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
28384 CGTGCTTGCT
28394 TCTTCG TCTTCG TCTTCG TCTTCG TCT
1 TCTTCG TCTTCG TCTTCG TCTTCG TCT
28421 AGGAGGGGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.33, G:0.15, T:0.52
Consensus pattern (6 bp):
TCTTCG
Found at i:29847 original size:6 final size:6
Alignment explanation
Indices: 29836--29860 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
29826 AGAACACAAA
29836 CTTTGG CTTTGG CTTTGG CTTTGG C
1 CTTTGG CTTTGG CTTTGG CTTTGG C
29861 ATGACATGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.20, G:0.32, T:0.48
Consensus pattern (6 bp):
CTTTGG
Found at i:47688 original size:17 final size:17
Alignment explanation
Indices: 47666--47698 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
47656 GTTATGTTGA
47666 GGGAAGGTTCAAGGTGT
1 GGGAAGGTTCAAGGTGT
47683 GGGAAGGTTCAAGGTG
1 GGGAAGGTTCAAGGTG
47699 AGTGCATCGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.06, G:0.48, T:0.21
Consensus pattern (17 bp):
GGGAAGGTTCAAGGTGT
Found at i:48690 original size:21 final size:21
Alignment explanation
Indices: 48665--48726 Score: 88
Period size: 21 Copynumber: 3.0 Consensus size: 21
48655 CCAATTGAGA
48665 GTGCATTAAGGCCCAATAACG
1 GTGCATTAAGGCCCAATAACG
* *
48686 GTGCATTAAGGTCCAATAACT
1 GTGCATTAAGGCCCAATAACG
* *
48707 GTGAATTCAGGCCCAATAAC
1 GTGCATTAAGGCCCAATAAC
48727 CATATTAGTG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.23
Consensus pattern (21 bp):
GTGCATTAAGGCCCAATAACG
Found at i:50791 original size:333 final size:333
Alignment explanation
Indices: 48949--53359 Score: 6193
Period size: 333 Copynumber: 13.3 Consensus size: 333
48939 GGAATAAAAA
* * * * *
48949 GTGGCTGAGATTT-TATTAGATGAATACAAATATTTTAATGAGTCTTGATGTAAAAAATCATACA
1 GTGGCTGAGATTTCGA-TAGATGAATACAGATATTTTAATGAGTCTTGACGCAAAAAATCATGCA
* * * * **
49013 AAACTGAGTCGGGG-CCCTAGAA--C----T-----AAAAA-CGCGATGGTTAGTGCAAAATTTC
65 AAACTGAGCCGGGGCCCCGA-AACGCGTTTTGAGCCAAAAACCGTGATGGTTAGTACACGATTTC
* *
49065 AGCTAAAATTTTGCAAAAATTGACCCGAAAGTTTTGCGCTCAATTTTTTGCCACAATAATCGTAT
129 GGCTAAAATTTTGCAAAAATTGACCCGAAACTTTTGCGCTCAATTTTTTGCCACAATAATCGTAT
* * * *
49130 AAAATATATAACTCAACGTAAAAAAAATTTTAGGG-TATCTCACGCTTCTAATATAATTTTTCCA
194 AAAATATATAACTCAACGTCAAAAAGATTTTAGGGCT-TTTCACGCTTCTAATATCATTTTTCCA
** * * *** * * *
49194 ATCATTTCTGAAATAAAAATTCGAATTAAATCGGAAAAAGATTCTGATGCTTGTAAAAACAAATC
258 ATTTTTTCT-AAATTAAAATTCTAATCGTATTGGAAAACGATTCTGATGCTCGTAAAAACAAATC
49259 CTTAAATCCATT
322 CTTAAATCCATT
*
49271 GTGGCTGAGATTTCGATAGATGAATACAGATATTTTAATAAGTCTTGACG-AAAAAATCATGCAA
1 GTGGCTGAGATTTCGATAGATGAATACAGATATTTTAATGAGTCTTGACGCAAAAAATCATGCAA
* * * * *
49335 AAATGAACCGGGGCCCC-AGGATGTGTTTTGAG-CAAAAACC--G-T-G--A-TACACGATTTCG
66 AACTGAGCCGGGGCCCCGA-AACGCGTTTTGAGCCAAAAACCGTGATGGTTAGTACACGATTTCG
* * * *
49391 GCTAAAATTTTGCAAAAATTGATCCGAAACTTTTGAGC-CTAATTTCTTGCCACAATATTCGTAT
130 GCTAAAATTTTGCAAAAATTGACCCGAAACTTTTGCGCTC-AATTTTTTGCCACAATAATCGTAT
* * *
49455 AAAATTTATAACTCAACGTCAAAAAGATTTTAGGG-TCTTTCACGCTTCTAATATTATTTTTCCT
194 AAAATATATAACTCAACGTCAAAAAGATTTTAGGGCT-TTTCACGCTTCTAATATCATTTTTCCA
* * * * *
49519 ATTTTTTCTGAATTAAAATTCTAATAGTATTGGAAAACGATTATGATACTCGTAAAAACAGATCC
258 ATTTTTTCTAAATTAAAATTCTAATCGTATTGGAAAACGATTCTGATGCTCGTAAAAACAAATCC
49584 TTAAATCCATT
323 TTAAATCCATT
* * *
49595 GTGGCTGAGATTTAGATAGATGAATACA-ACTATTTTAATGAGTCTTGACACAAAAAATCATGTA
1 GTGGCTGAGATTTCGATAGATGAATACAGA-TATTTTAATGAGTCTTGACGCAAAAAATCATGCA
* * * * *
49659 AAACTGAGCCGGGGTCCCGGAGCGCGTTTTGAGCCAAAAACCGTGATGGTTTGTACATGATTTCG
65 AAACTGAGCCGGGGCCCCGAAACGCGTTTTGAGCCAAAAACCGTGATGGTTAGTACACGATTTCG
*
49724 GCTAAAATTTTGCAAAAATTGACCCGAAAGTTTTGCGCTCAATTTTTTGCCACAATAATCGTATA
130 GCTAAAATTTTGCAAAAATTGACCCGAAACTTTTGCGCTCAATTTTTTGCCACAATAATCGTATA
* ** *
49789 AAATATATAACTCAACGTC-AAAAGATTTTAGAG-TCTTTCTTGCTTCTAATATCA-TTTACC-A
195 AAATATATAACTCAACGTCAAAAAGATTTTAGGGCT-TTTCACGCTTCTAATATCATTTTTCCAA
* *** * *
49850 TTTTTTCTGAATTAAAATTCTAATTAAATCGGAAAAAGATTCTGATGCTCGTAAAAACAAATCCT
259 TTTTTTCTAAATTAAAATTCTAATCGTATTGGAAAACGATTCTGATGCTCGTAAAAACAAATCCT
*
49915 T-AATACCAAT
324 TAAAT-CCATT
* * * * * * * * *
49925 ATGGCTGAGATTTTGTTAGGTGAATACATATATTTTAATGAGTCCTGACGTAAAAAATCATGTAT
1 GTGGCTGAGATTTCGATAGATGAATACAGATATTTTAATGAGTCTTGACGCAAAAAATCATGCAA
* ** * * * * * * *
49990 AACTGAGCCAGGGCCATGGATCGCATTTTTAGCCAAAAATCGTGATGGTTAGTACACGAGTTCAG
66 AACTGAGCCGGGGCCCCGAAACGCGTTTTGAGCCAAAAACCGTGATGGTTAGTACACGATTTCGG
* * *
50055 CTAAAATTTTGCAAAAATAGACCCGAATGC-TTTGCGCTCAATTTTTTTCCACAATAATCGTATA
131 CTAAAATTTTGCAAAAATTGACCCGAA-ACTTTTGCGCTCAATTTTTTGCCACAATAATCGTATA
* * * *
50119 AAATATTTAACTCAACGTCAAAAATATTTTAGGGCCTTTCACGCTTCTAAAATCATTTTTCCAAT
195 AAATATATAACTCAACGTCAAAAAGATTTTAGGGCTTTTCACGCTTCTAATATCATTTTTCCAAT
* * * *** * * *
50184 TTTTTCTGAACTAAAATACTAATTAAATCGGAAAAAGATTCTGATGCTCGTAAAAACAAATCCTA
260 TTTTTCTAAATTAAAATTCTAATCGTATTGGAAAACGATTCTGATGCTCGTAAAAACAAATCCTT
** *
50249 AAATTTA-A
325 AAATCCATT
* * *
50257 GATGGCTGAGATTTTGATAAATGAATACGGATATTTTAATGAGTCTTGACGCAAAAAAATCATGC
1 G-TGGCTGAGATTTCGATAGATGAATACAGATATTTTAATGAGTCTTGACGC-AAAAAATCATGC
*
50322 AAAACTGAGTCGGGGCCCCGAAACGCGTTTTGAGCCAAAAACCGTGATGGTTAGTACACGATTTC
64 AAAACTGAGCCGGGGCCCCGAAACGCGTTTTGAGCCAAAAACCGTGATGGTTAGTACACGATTTC
* *
50387 GGCTAAAATTTTGCAAAAATTGACCCGAATCTTTTGCGCTCAATTTTTTGCCACAATAATCGTAA
129 GGCTAAAATTTTGCAAAAATTGACCCGAAACTTTTGCGCTCAATTTTTTGCCACAATAATCGTAT
* * *
50452 AAAATATATAACTCAATGTCAAAAAGATTTTAGGGCTTTTAACGCGTCTAATATCATTTTTCCAA
194 AAAATATATAACTCAACGTCAAAAAGATTTTAGGGCTTTTCACGCTTCTAATATCATTTTTCCAA
* ** * *
50517 GTTTTTCTAAATTAAAATTCTTGTCGTATTGGAAAAAGATTTTGATGCTCGTAAAAACAAATCCT
259 TTTTTTCTAAATTAAAATTCTAATCGTATTGGAAAACGATTCTGATGCTCGTAAAAACAAATCCT
*
50582 TAAATCAATT
324 TAAATCCATT
* *
50592 GTGTCTGATATTTCGATAGATGAATACAGATATTTTAATGAGTCTTGACGCAAAAAATCATGCAA
1 GTGGCTGAGATTTCGATAGATGAATACAGATATTTTAATGAGTCTTGACGCAAAAAATCATGCAA
*
50657 AACTGAGCCGGGGCCCCGAAACGCGTTTTGAGCCAAAAACCGTGATGGTTAGTATACGATTTCGG
66 AACTGAGCCGGGGCCCCGAAACGCGTTTTGAGCCAAAAACCGTGATGGTTAGTACACGATTTCGG
* * *
50722 CTAAAATTTTGCAAAAATTGACCCGAAACATTTACGCTCAATTTTTTTCCACAATAATCGTATAA
131 CTAAAATTTTGCAAAAATTGACCCGAAACTTTTGCGCTCAATTTTTTGCCACAATAATCGTATAA
*
50787 AATATATAACACAACGTCAAAAAGATTTTAGGGCTTTTCACGCTTCTAATATCATTTTTCCAATT
196 AATATATAACTCAACGTCAAAAAGATTTTAGGGCTTTTCACGCTTCTAATATCATTTTTCCAATT
* * * *
50852 TTTTCTAAACTAAAATTCTAATCGTATTAGAAAACGATTCTGATGCTCATAAAAACAAATTCTTA
261 TTTTCTAAATTAAAATTCTAATCGTATTGGAAAACGATTCTGATGCTCGTAAAAACAAATCCTTA
*
50917 AATCAATT
326 AATCCATT
** * *
50925 GTGTATGTGATTTCGATAGATGAATACAGATATTTTAATGTGTCTTGACGCAAAAAATCATGCAA
1 GTGGCTGAGATTTCGATAGATGAATACAGATATTTTAATGAGTCTTGACGCAAAAAATCATGCAA
*
50990 AACTGAGCCGGGG-CCCGAAACGCGTTTTGAGCCAAAAACCGTGATGTTTAGTACACGATTTCGG
66 AACTGAGCCGGGGCCCCGAAACGCGTTTTGAGCCAAAAACCGTGATGGTTAGTACACGATTTCGG
* *
51054 CTAAAATTTTGCAAAAATTGACCCGAAACTTTTGCGCTCAATTTTTTGCCAAAATAATCATATAA
131 CTAAAATTTTGCAAAAATTGACCCGAAACTTTTGCGCTCAATTTTTTGCCACAATAATCGTATAA
* * * *
51119 AATATATAACACAAAGTCAAAAAGATTTTAGGGCTTTTCACGCGTCTAATATCATTTTTCCAAGT
196 AATATATAACTCAACGTCAAAAAGATTTTAGGGCTTTTCACGCTTCTAATATCATTTTTCCAATT
*
51184 TTTTCTAAATTAAAATTCTAATCGTATTGGAAAACGATTCTGATGCTCGTAAAAACAAAACCTTA
261 TTTTCTAAATTAAAATTCTAATCGTATTGGAAAACGATTCTGATGCTCGTAAAAACAAATCCTTA
51249 AATCCATT
326 AATCCATT
* *
51257 GTGGCTGAGATTTCAATAGATAAATACAGATATTTTAATGAGTCTTGACGCAAAAAATCATGCAA
1 GTGGCTGAGATTTCGATAGATGAATACAGATATTTTAATGAGTCTTGACGCAAAAAATCATGCAA
* *
51322 AACTGAGCCGGGGCCCCGAAATGCGTTTTGAGTCAAAAACCGTGATGGTTAGTACACGATTTCGG
66 AACTGAGCCGGGGCCCCGAAACGCGTTTTGAGCCAAAAACCGTGATGGTTAGTACACGATTTCGG
* * * * *
51387 CTAAAATTTTGCAAAAATTGAACCGAAACTTGTACGCTCAATTTTTTGCCAAAACAATCGTTATA
131 CTAAAATTTTGCAAAAATTGACCCGAAACTTTTGCGCTCAATTTTTTGCCACAATAATCG-TATA
* * ** *
51452 TAATATATAACTCAACATCTCAAAGATTTTAGGGCTTTTCACGCTTCTAATATCAATTTTCCAAT
195 AAATATATAACTCAACGTCAAAAAGATTTTAGGGCTTTTCACGCTTCTAATATCATTTTTCCAAT
* * * *** * * *
51517 TTTTTCTGAACTAAAATTTTAATTAAATCGGAAAAAGATTTTGATGCTCGTAAAAACAAATCCTT
260 TTTTTCTAAATTAAAATTCTAATCGTATTGGAAAACGATTCTGATGCTCGTAAAAACAAATCCTT
*
51582 AAATCCGTT
325 AAATCCATT
*
51591 GTGGCTGAGATTTCGATAGATGAATACATATATTTTAATGAGTCTTGACGCAAAAAATCATGCAA
1 GTGGCTGAGATTTCGATAGATGAATACAGATATTTTAATGAGTCTTGACGCAAAAAATCATGCAA
* *
51656 AACTGAGCCGGGGCCCCGGAACGTGTTTTGAGCCAAAAACCGTGATGGTTAGTACACGATTTCGG
66 AACTGAGCCGGGGCCCCGAAACGCGTTTTGAGCCAAAAACCGTGATGGTTAGTACACGATTTCGG
*
51721 CTAAAATTTTGCAAAAATTGACCCGAAACTTTTGCGCTCAATTTTTTGCCACAATAATCATATAA
131 CTAAAATTTTGCAAAAATTGACCCGAAACTTTTGCGCTCAATTTTTTGCCACAATAATCGTATAA
* * * *
51786 AATATATAACACAACGACAAAAAGCTTTTAGGTCTTTTCACGCTTCTAATATCATTTTTCCAATT
196 AATATATAACTCAACGTCAAAAAGATTTTAGGGCTTTTCACGCTTCTAATATCATTTTTCCAATT
*
51851 TTTTCTAAATTAAAATTCTAATCGTATTAGAAAACGATTCTGATGCTCGTAAAAA-AAATCCTTA
261 TTTTCTAAATTAAAATTCTAATCGTATTGGAAAACGATTCTGATGCTCGTAAAAACAAATCCTTA
51915 AATCCATT
326 AATCCATT
* * * * *
51923 GTAGCTGAGTTTTCGGTAGATGAATACAGATATTTTAAGGAGTCTTGACGCAAAATATCATGCAA
1 GTGGCTGAGATTTCGATAGATGAATACAGATATTTTAATGAGTCTTGACGCAAAAAATCATGCAA
* * *
51988 AACTGAGCCGGGGCCCCGAAACGCGTTTTAAGCAAAAAACC------G-T-G--CACGATTTAGG
66 AACTGAGCCGGGGCCCCGAAACGCGTTTTGAGCCAAAAACCGTGATGGTTAGTACACGATTTCGG
* *
52043 TTAAAATTTTGCAAAAATTGACCCGAAAGTTTTGCGCTCAATTTTTTGCCACAATAATCGTATAA
131 CTAAAATTTTGCAAAAATTGACCCGAAACTTTTGCGCTCAATTTTTTGCCACAATAATCGTATAA
* *
52108 AATATATAACTCAACATCAAAAAGATTTTAGGGAC-TTTCACGCTTCTAATATCGTTTTTCCAAT
196 AATATATAACTCAACGTCAAAAAGATTTTAGGG-CTTTTCACGCTTCTAATATCATTTTTCCAAT
* *** * * * *
52172 TTTTTCTGAATTAAAATTCTAATTAAATCGGAAAAAGATTTTGATGCTAGTAAAAACAAATCCTT
260 TTTTTCTAAATTAAAATTCTAATCGTATTGGAAAACGATTCTGATGCTCGTAAAAACAAATCCTT
**
52237 AAATCTGTT
325 AAATCCATT
* * *
52246 GTGGCTGAAATTTCGATAGATGAATACATATATTTTAATGAGTCTTGACACAAAAAATCATGCAA
1 GTGGCTGAGATTTCGATAGATGAATACAGATATTTTAATGAGTCTTGACGCAAAAAATCATGCAA
* * *
52311 AACTGAGCCGGGGCCCCGGAACACGTTTTGAGCCAAAAACCGTGATGATTAGTACACGATTTCGG
66 AACTGAGCCGGGGCCCCGAAACGCGTTTTGAGCCAAAAACCGTGATGGTTAGTACACGATTTCGG
* *
52376 CTAAAACTTTGCAAAAATTGACCCGAAACTTTTACGCTCAATTTTTTGCCACAATAATCGTATAA
131 CTAAAATTTTGCAAAAATTGACCCGAAACTTTTGCGCTCAATTTTTTGCCACAATAATCGTATAA
* * * *
52441 AATATATAACTCAACGTCAAAAAGATTTGAGGGCTTTTAACGCGTCTAATATCATTTTTCCAAGT
196 AATATATAACTCAACGTCAAAAAGATTTTAGGGCTTTTCACGCTTCTAATATCATTTTTCCAATT
52506 TTTTCTAAATTAAAATTCTAATCGTATTGGAAAACGATTCTGATGCTCGTAAAAACAAATCCTTA
261 TTTTCTAAATTAAAATTCTAATCGTATTGGAAAACGATTCTGATGCTCGTAAAAACAAATCCTTA
52571 AATCCATT
326 AATCCATT
52579 GTGGCTGAGATTTCGATAGATGAATACAGATATTTTAATGAGTCTTGACGCAAAAAATCATGCAA
1 GTGGCTGAGATTTCGATAGATGAATACAGATATTTTAATGAGTCTTGACGCAAAAAATCATGCAA
* *
52644 AACTGATCCGGGGCCCCTG-AACGCGTTTTGAGCCAAAAACCGTGATGGTTAGTACACGATTTCA
66 AACTGAGCCGGGGCCCC-GAAACGCGTTTTGAGCCAAAAACCGTGATGGTTAGTACACGATTTCG
* ***
52708 GCTAAAATTTTGCAAAAGTTGACCCGAAACTTTTGCGCTCAATTTTCCACCACAATAATCGTATA
130 GCTAAAATTTTGCAAAAATTGACCCGAAACTTTTGCGCTCAATTTTTTGCCACAATAATCGTATA
* * *
52773 AAATATATAACTCAATGTCAAAAAGATTTTAGGGCTTTTCACGCGTCTAATATCATTTTTCCAAG
195 AAATATATAACTCAACGTCAAAAAGATTTTAGGGCTTTTCACGCTTCTAATATCATTTTTCCAAT
* * * *
52838 TTTTTCTATATTAAATTTCTAATCGTATTGGAAAACGATTCTGATGCTCGTAAAAACAAAACATT
260 TTTTTCTAAATTAAAATTCTAATCGTATTGGAAAACGATTCTGATGCTCGTAAAAACAAATCCTT
*
52903 AAGTCCATT
325 AAATCCATT
52912 GTGGCTGAGATTTCGATAGATGAATACAGATATTTTAATGAGTCTTGACGCAAAAAATCATGCAA
1 GTGGCTGAGATTTCGATAGATGAATACAGATATTTTAATGAGTCTTGACGCAAAAAATCATGCAA
*
52977 AACTGAGCCGGGGCCTCGAAACGCGTTTTGAGCCAAAAACCGTGATGGTTAGTACACGATTTCGG
66 AACTGAGCCGGGGCCCCGAAACGCGTTTTGAGCCAAAAACCGTGATGGTTAGTACACGATTTCGG
* *
53042 CTAAAATTTTGCAAAAATTGACCCGAAACTTTTGCGCTCAATTTTGTGCCACAATAATCGTAAAA
131 CTAAAATTTTGCAAAAATTGACCCGAAACTTTTGCGCTCAATTTTTTGCCACAATAATCGTATAA
* * * * * *
53107 AATTTATAACTCAATGTTAAAAAGATTTTAGGGCTTTTAACGCGTCTAATATCATTTTTCCAAGT
196 AATATATAACTCAACGTCAAAAAGATTTTAGGGCTTTTCACGCTTCTAATATCATTTTTCCAATT
*
53172 TTTTCTAAATTAAAATTCTAATCGTATTGGAAAACGATTCTGATGCTCGTAAAAACAAAACCTTA
261 TTTTCTAAATTAAAATTCTAATCGTATTGGAAAACGATTCTGATGCTCGTAAAAACAAATCCTTA
*
53237 AATCCAGT
326 AATCCATT
*
53245 GTGGCTGAGATTTCGATAGATGAATACATATATTTTAATGAGTCTTGACGCAAAAAAATCATGCA
1 GTGGCTGAGATTTCGATAGATGAATACAGATATTTTAATGAGTCTTGACGC-AAAAAATCATGCA
* *
53310 AAACTGAGTCGGGGCCCCGAAACGCGTTTTGAGCCAAAAACCATGATGGT
65 AAACTGAGCCGGGGCCCCGAAACGCGTTTTGAGCCAAAAACCGTGATGGT
Statistics
Matches: 3656, Mismatches: 377, Indels: 100
0.88 0.09 0.02
Matches are distributed among these distances:
321 26 0.01
322 222 0.06
323 112 0.03
324 102 0.03
325 166 0.05
326 10 0.00
327 1 0.00
328 2 0.00
329 5 0.00
330 251 0.07
331 40 0.01
332 461 0.13
333 1607 0.44
334 650 0.18
335 1 0.00
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.32
Consensus pattern (333 bp):
GTGGCTGAGATTTCGATAGATGAATACAGATATTTTAATGAGTCTTGACGCAAAAAATCATGCAA
AACTGAGCCGGGGCCCCGAAACGCGTTTTGAGCCAAAAACCGTGATGGTTAGTACACGATTTCGG
CTAAAATTTTGCAAAAATTGACCCGAAACTTTTGCGCTCAATTTTTTGCCACAATAATCGTATAA
AATATATAACTCAACGTCAAAAAGATTTTAGGGCTTTTCACGCTTCTAATATCATTTTTCCAATT
TTTTCTAAATTAAAATTCTAATCGTATTGGAAAACGATTCTGATGCTCGTAAAAACAAATCCTTA
AATCCATT
Done.