Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017980.1 Corchorus olitorius cultivar O-4 contig18013, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129979

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1918
333
5.8
330
89
2
2831
35
17
15
31
1.91
2617--3247
334
1.9
334
90
3
1002
36
16
13
33
1.88
3742--5028
338
3.9
333
90
3
1987
36
16
14
32
1.89
5045--5922
335
2.6
328
82
8
988
32
15
16
35
1.90
12205--12238
15
2.4
14
90
9
52
64
0
17
17
1.29
12212--12251
15
2.5
15
84
8
53
62
2
15
20
1.43
17997--18059
19
3.1
19
70
16
63
58
17
11
12
1.62
19069--19111
14
2.9
14
80
12
50
23
13
25
37
1.92
28580--28609
1
30.0
1
100
0
60
100
0
0
0
0.00
32325--32476
76
2.0
76
100
0
304
21
18
14
46
1.84
37427--37473
23
2.0
23
91
0
76
40
4
0
55
1.19
38223--38259
19
1.9
19
88
0
56
32
13
13
40
1.84
39709--39779
26
2.9
24
76
15
81
49
21
4
25
1.67
40237--40283
8
6.1
8
92
7
80
38
0
40
21
1.53
40237--40283
15
3.1
15
96
3
85
38
0
40
21
1.53
40239--40283
23
2.0
22
95
4
81
40
0
40
20
1.52
65559--65592
2
17.5
2
87
6
52
55
0
0
44
0.99
72979--73289
69
4.5
69
81
1
354
23
24
20
32
1.98
80369--80409
7
5.9
7
88
0
64
41
34
14
9
1.79
80369--80409
21
2.0
21
100
0
82
41
34
14
9
1.79
88688--88741
22
2.5
22
84
0
63
40
11
7
40
1.69
88795--89447
22
30.3
21
67
15
198
35
16
10
37
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88629--88858
114
2.0
114
100
0
460
36
15
7
40
1.76
89087--89190
23
4.6
23
86
1
138
37
16
10
35
1.83
89458--89630
22
7.9
22
75
5
91
34
12
11
42
1.78
89460--89630
44
3.9
44
73
13
145
33
11
11
42
1.78
89465--89632
66
2.5
66
78
3
169
33
12
11
42
1.78
89753--89847
22
4.3
22
74
10
86
37
17
8
35
1.81
89838--89879
22
1.9
22
85
9
59
30
14
9
45
1.77
90472--90596
44
2.8
43
80
11
137
36
17
9
36
1.83
90472--90597
22
5.7
22
76
12
98
37
17
9
35
1.82
91043--91098
13
4.2
13
80
13
53
44
0
3
51
1.18
92099--92145
20
2.3
20
85
7
60
53
19
4
23
1.63
101697--101721
2
12.5
2
100
0
50
48
0
0
52
1.00
102526--102554
7
4.1
7
100
0
58
27
31
0
41
1.56
117440--117480
17
2.4
16
84
11
55
26
19
14
39
1.90
118461--118489
1
29.0
1
100
0
58
0
0
0
100
0.00
122287--122326
3
13.3
3
94
0
71
65
2
32
0
1.06
129938--129979
2
21.0
2
100
0
84
50
0
0
50
1.00

Tables:   1

The End!