Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017987.1 Corchorus olitorius cultivar O-4 contig18020, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44503

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2414--2451
18
2.1
18
100
0
76
34
10
5
50
1.59
2820--2851
11
2.8
11
95
4
55
87
3
9
0
0.64
4715--4751
18
2.1
18
100
0
74
45
0
5
48
1.25
4715--4761
16
2.7
17
83
12
60
46
2
4
46
1.34
5096--5152
28
2.0
28
100
0
114
24
21
14
40
1.90
6598--8429
992
1.8
980
80
8
2193
36
16
13
33
1.88
19524--19563
13
3.1
13
88
0
53
20
42
15
22
1.88
19601--19649
13
3.7
13
76
15
55
14
20
20
44
1.86
28528--28747
115
1.9
114
95
0
395
23
15
20
39
1.92
32328--32785
47
9.8
46
86
5
600
45
5
18
30
1.72
32328--32785
141
3.3
141
88
4
669
45
5
18
30
1.72
32746--32889
54
2.7
54
82
3
175
47
6
18
27
1.74
38865--38918
19
2.6
21
77
19
60
38
18
3
38
1.69
43014--43064
23
2.2
23
86
10
77
15
52
3
27
1.60

Tables:   1

The End!