Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017988.1 Corchorus olitorius cultivar O-4 contig18021, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11679
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.33


Found at i:10081 original size:22 final size:22

Alignment explanation


    Indices: 10056--10100  Score: 63
    Period size: 22  Copynumber: 2.0  Consensus size: 22

      10046 CCCAAGACCT

                  *               
      10056 CATGGTTCAACTATACCAAATC
          1 CATGGTCCAACTATACCAAATC

                      *   *       
      10078 CATGGTCCAAGTATGCCAAATC
          1 CATGGTCCAACTATACCAAATC

             
      10100 C
          1 C

      10101 TTCCAAGTTT


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  22   20  1.00

ACGTcount: A:0.33, C:0.29, G:0.13, T:0.24


Consensus pattern (22 bp):   
CATGGTCCAACTATACCAAATC
Done.