Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017989.1 Corchorus olitorius cultivar O-4 contig18022, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 22332
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32


Found at i:6637 original size:22 final size:22

Alignment explanation


    Indices: 6609--6677  Score: 75
    Period size: 22  Copynumber: 3.1  Consensus size: 22

       6599 CACGACACGA

                    *             
       6609 CACGACCCGCGTGCCGGCACAG
          1 CACGACCCACGTGCCGGCACAG

                      * *        *
       6631 CACGACCCACATACCGGCACAA
          1 CACGACCCACGTGCCGGCACAG

               *            * *   
       6653 CACAACCCACGTGCCGACGCAG
          1 CACGACCCACGTGCCGGCACAG

               
       6675 CAC
          1 CAC

       6678 AACTTATTTT


Statistics
Matches: 37,  Mismatches: 10, Indels: 0
        0.79            0.21        0.00

Matches are distributed among these distances:
  22   37  1.00

ACGTcount: A:0.28, C:0.46, G:0.22, T:0.04


Consensus pattern (22 bp):   
CACGACCCACGTGCCGGCACAG

Found at i:16099 original size:1 final size:1

Alignment explanation


    Indices: 16093--16120  Score: 56
    Period size: 1  Copynumber: 28.0  Consensus size: 1

      16083 TCTTTGAAAC

                                        
      16093 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
          1 TTTTTTTTTTTTTTTTTTTTTTTTTTTT

      16121 ATGAAAGAGA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   27  1.00

ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00


Consensus pattern (1 bp):   
T

Done.