genome.fa.s17991.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017991.1 Corchorus olitorius cultivar O-4 contig18024, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  132373

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1163--1264	22	4.6	22	78	10	93	39	13	11	35	1.82
1184--1396	22	9.6	22	71	10	112	38	14	12	34	1.83
1430--1771	22	15.5	22	65	14	98	33	15	10	40	1.81
1663--1773	44	2.5	43	82	5	123	33	15	12	38	1.85
2541--2586	6	7.5	6	88	11	67	0	0	13	86	0.56
2541--2583	13	3.3	13	100	0	86	0	0	13	86	0.58
2541--2586	19	2.5	19	89	10	69	0	0	13	86	0.56
3502--3559	26	2.3	26	88	8	84	56	0	17	25	1.40
4228--4277	3	16.3	3	95	4	91	36	0	0	64	0.94
6958--7500	268	2.0	268	95	0	978	32	24	17	25	1.97
8613--8646	17	2.1	17	94	5	61	64	5	17	11	1.45
9173--9237	29	2.2	30	83	8	80	35	16	6	41	1.74
15927--16009	29	2.9	28	80	3	85	13	9	32	44	1.76
17341--17387	16	2.9	16	71	22	53	31	31	19	17	1.94
17341--17420	32	2.5	32	84	8	92	32	31	21	15	1.94
18394--18438	15	2.9	15	81	15	56	35	40	17	6	1.76
22102--22146	23	1.9	24	82	13	58	46	6	17	28	1.73
24560--24637	33	2.4	33	100	0	156	7	52	21	17	1.70
24718--24791	21	3.5	21	71	1	58	20	44	21	13	1.85
30514--30552	2	19.5	2	94	0	69	51	2	0	46	1.14
32517--32814	149	2.0	149	99	0	587	13	18	20	47	1.81
45009--45033	13	1.9	13	100	0	50	16	16	24	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53979--54097	41	2.9	42	75	9	120	26	11	11	49	1.74
56457--56490	16	2.1	17	88	5	52	44	0	2	52	1.16
61477--61683	114	1.8	110	87	7	308	28	20	12	39	1.88
74169--74208	7	5.4	7	82	11	53	72	2	22	2	1.09
74516--74563	24	2.0	24	87	0	69	27	25	6	41	1.79
78878--78993	58	2.0	58	93	0	196	41	14	12	31	1.84
82280--82324	23	1.9	24	95	4	83	77	8	8	4	1.10
82591--82626	19	1.9	18	88	5	54	77	5	2	13	1.05
87240--87304	32	2.0	32	96	0	121	32	3	30	33	1.73
101855--101881	2	13.5	2	100	0	54	51	0	0	48	1.00
101879--101912	3	11.3	3	100	0	68	67	0	0	32	0.91
110411--110448	20	2.0	20	89	5	60	28	2	0	68	1.03
113878--113913	19	1.9	18	88	5	54	41	8	22	27	1.82
114799--114834	19	1.9	18	88	5	54	41	8	22	27	1.82
114787--114846	30	2.0	30	83	6	77	41	8	18	31	1.80
113725--115567	919	2.0	921	93	1	3149	30	17	18	34	1.93
117744--117955	27	7.9	26	93	1	112	35	24	18	21	1.96
117775--117955	27	6.7	27	95	0	317	35	23	19	21	1.96
121280--121313	13	2.4	15	90	9	54	0	26	0	73	0.83
121281--121319	19	2.1	18	85	4	51	0	23	0	76	0.78
124163--124219	27	2.1	27	93	0	96	40	10	17	31	1.84
124680--125021	35	9.8	34	87	5	420	28	20	19	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125037--125321	50	5.7	50	94	0	489	28	13	27	30	1.94
125922--126070	50	3.0	50	89	0	226	36	14	16	32	1.89

Tables:   1

The End!