Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017992.1 Corchorus olitorius cultivar O-4 contig18025, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8577
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.30


Found at i:113 original size:27 final size:27

Alignment explanation


    Indices: 83--139  Score: 114
    Period size: 27  Copynumber: 2.1  Consensus size: 27

         73 AAATCACTAC

                                       
         83 TATAAACTATGGAATATGCAGGTCTAA
          1 TATAAACTATGGAATATGCAGGTCTAA

                                       
        110 TATAAACTATGGAATATGCAGGTCTAA
          1 TATAAACTATGGAATATGCAGGTCTAA

               
        137 TAT
          1 TAT

        140 GGAAAATATT


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   30  1.00

ACGTcount: A:0.40, C:0.11, G:0.18, T:0.32


Consensus pattern (27 bp):   
TATAAACTATGGAATATGCAGGTCTAA
Done.