Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017993.1 Corchorus olitorius cultivar O-4 contig18026, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79067

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16888--16942
27
2.1
26
82
3
65
41
1
1
54
1.21
23699--23728
12
2.5
12
94
0
51
53
3
43
0
1.17
25297--25341
21
2.1
21
95
0
81
20
26
20
33
1.97
26779--27028
48
5.2
48
90
1
360
26
29
11
32
1.91
31138--31254
39
3.0
39
86
8
166
28
16
5
49
1.69
34930--34958
13
2.2
13
100
0
58
13
13
0
72
1.13
35260--35333
27
2.7
27
91
0
121
41
28
12
17
1.85
44829--44858
11
2.7
11
100
0
60
16
26
0
56
1.40
45561--45596
18
2.1
17
94
5
63
11
16
8
63
1.49
51994--52029
16
2.2
16
90
0
54
22
11
2
63
1.39
54188--54390
32
6.4
32
94
0
327
22
23
27
27
1.99
59036--59307
133
2.0
135
93
1
467
24
19
16
40
1.91
60343--60387
12
3.8
12
87
0
72
64
0
8
26
1.23
60322--60387
20
3.3
20
87
4
89
65
1
9
24
1.30
60322--60387
4
16.5
4
79
0
60
65
1
9
24
1.30
61114--61156
19
2.3
19
84
11
54
60
2
4
32
1.30
65518--65572
13
4.5
12
78
17
51
58
10
1
29
1.43
77832--77954
41
3.2
38
74
12
124
33
8
12
45
1.73
78892--78926
2
18.0
2
94
5
63
51
0
0
48
1.00

Tables:   1

The End!