Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017996.1 Corchorus olitorius cultivar O-4 contig18029, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40012

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8144--8446
163
1.9
163
86
4
441
31
17
17
33
1.94
8402--8484
31
2.7
31
94
0
139
24
21
21
32
1.98
8686--8731
24
2.0
24
83
8
60
54
0
0
45
0.99
14705--14839
28
4.9
27
95
4
234
17
45
17
18
1.85
14705--14839
57
2.4
56
96
3
247
17
45
17
18
1.85
16821--16855
12
2.9
12
91
0
52
14
8
54
22
1.67
17202--17387
32
5.8
32
86
5
225
33
22
19
24
1.97
17202--17390
63
2.9
64
81
9
242
33
21
19
24
1.97
17202--17390
95
2.0
97
87
4
276
33
21
19
24
1.97
17535--17585
24
2.1
24
88
0
75
23
21
27
27
1.99
25728--25865
72
1.9
72
92
0
231
23
27
15
33
1.95
28584--28627
24
2.0
21
86
13
61
31
2
2
63
1.19
29720--29761
22
2.0
22
90
4
68
21
16
0
61
1.34
29720--29762
21
2.0
21
86
8
61
23
16
0
60
1.35
31375--31476
51
2.0
52
81
9
120
22
23
13
40
1.90

Tables:   1

The End!