Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017998.1 Corchorus olitorius cultivar O-4 contig18031, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31489

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8482--8583
51
2.0
52
81
9
120
22
23
13
40
1.90
10652--10905
112
2.3
113
83
2
314
37
13
16
32
1.89
10824--11003
96
1.9
96
88
2
272
38
11
16
33
1.85
10916--11194
111
2.5
113
88
1
409
41
12
11
34
1.79
14493--14545
19
2.8
18
78
13
54
3
43
7
45
1.50
22792--22877
23
3.9
22
86
6
104
40
8
18
32
1.80
22869--22927
29
2.0
29
86
0
82
40
11
6
40
1.68
22898--23007
22
5.0
22
76
11
109
44
11
8
35
1.71
22898--23007
44
2.4
45
82
7
125
44
11
8
35
1.71
23032--23099
2
36.0
2
75
11
63
44
1
4
50
1.31
25721--25759
2
20.0
2
94
5
71
48
0
0
51
1.00
25754--25789
17
2.1
17
100
0
72
63
5
5
25
1.38
26075--27098
435
2.3
433
81
8
1104
31
12
12
43
1.80
29390--29440
21
2.4
21
83
3
66
43
11
23
21
1.85

Tables:   1

The End!