Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018000.1 Corchorus olitorius cultivar O-4 contig18033, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69618

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5819--5869
21
2.4
21
83
3
66
43
11
23
21
1.85
14377--14426
25
2.0
26
88
11
77
48
8
38
6
1.57
14382--14437
25
2.2
25
84
12
71
51
7
33
7
1.56
16146--16170
12
2.1
12
100
0
50
44
16
8
32
1.76
21979--22190
109
1.9
109
90
0
334
26
20
21
31
1.98
23221--23254
9
3.8
9
88
0
50
2
17
35
44
1.64
24778--24921
74
1.9
74
85
0
198
32
22
18
25
1.97
24796--24938
74
1.9
75
85
1
198
33
23
20
23
1.97
26692--26770
27
2.9
27
82
17
110
12
13
25
48
1.78
38191--38464
129
2.1
132
87
4
405
30
21
15
31
1.95
38668--38726
21
2.8
21
100
0
118
15
20
45
18
1.85
42576--42711
32
4.2
32
90
1
211
31
26
19
22
1.98
48112--48155
21
2.1
21
82
0
52
18
15
22
43
1.88
60581--60616
19
1.9
18
88
5
54
41
8
22
27
1.82
67771--67806
19
1.9
18
88
5
54
41
8
22
27
1.82
68405--68429
12
2.1
12
100
0
50
8
16
8
68
1.38

Tables:   1

The End!