Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018001.1 Corchorus olitorius cultivar O-4 contig18034, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18748

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1506--1557
26
2.0
26
85
7
70
65
5
7
21
1.40
2797--2944
76
1.9
76
81
5
174
17
29
28
25
1.97
3874--3923
26
1.9
26
87
0
73
14
20
12
54
1.71
3988--4013
4
6.5
4
100
0
52
46
0
0
53
1.00
6324--6368
21
2.1
21
84
8
56
44
0
24
31
1.54
10894--10935
20
2.1
20
86
8
59
54
7
11
26
1.62
13180--13228
21
2.3
21
82
6
55
14
26
16
42
1.86
14353--14411
10
6.4
9
75
23
52
76
3
10
10
1.13
14367--14404
16
2.3
17
86
4
51
81
2
7
7
0.96
15989--16015
12
2.2
12
100
0
54
14
37
25
22
1.93
16817--17070
29
8.7
29
85
6
334
20
18
22
38
1.93
16815--17070
59
4.4
58
86
5
356
19
19
21
38
1.93
16815--17070
116
2.2
117
91
2
408
19
19
21
38
1.93

Tables:   1

The End!