Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018003.1 Corchorus olitorius cultivar O-4 contig18036, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66341

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4908--4932
13
1.9
13
100
0
50
40
8
4
48
1.51
8985--9026
15
2.7
15
88
3
66
11
7
11
69
1.37
12805--12857
23
2.3
23
96
0
97
11
22
35
30
1.89
20078--20426
178
2.0
178
98
0
680
38
12
13
35
1.82
20563--20625
26
2.4
25
80
12
65
44
11
14
30
1.79
21868--21903
18
1.9
18
88
5
54
38
11
22
27
1.88
30488--30544
30
1.9
29
86
10
80
22
14
5
57
1.56
32067--32102
19
1.9
18
88
5
54
41
8
22
27
1.82
38306--38463
28
5.5
29
80
6
169
41
25
15
17
1.88
41728--41800
22
3.5
21
75
10
69
45
8
13
32
1.73
43455--43497
22
2.0
22
85
0
59
6
16
9
67
1.40
44637--44669
15
2.2
15
100
0
66
30
45
12
12
1.78
49310--49371
32
1.9
32
87
6
90
25
43
3
27
1.70
51290--51321
10
3.1
11
82
17
50
6
21
0
71
1.07
53532--53649
50
2.4
48
87
4
164
26
15
5
53
1.62
54236--54299
27
2.5
27
87
7
89
37
7
26
28
1.84
54478--54514
15
2.5
15
100
0
74
43
16
24
16
1.87
60800--60848
21
2.3
21
78
0
53
20
22
42
14
1.88
63688--63727
15
2.6
16
88
4
55
62
12
7
17
1.52

Tables:   1

The End!