Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018007.1 Corchorus olitorius cultivar O-4 contig18040, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47997

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1175--1303
49
2.7
48
86
5
172
28
15
6
48
1.71
2001--2045
18
2.5
18
96
0
81
28
42
20
8
1.82
3276--3323
15
3.2
15
77
11
53
39
25
27
8
1.84
5940--6068
49
2.7
48
84
5
154
29
13
6
49
1.69
7103--7412
159
1.9
160
87
1
453
34
16
13
34
1.89
9284--9322
2
19.5
2
100
0
78
48
0
0
51
1.00
11534--11586
26
2.0
26
100
0
106
32
22
15
30
1.94
15989--16037
25
2.0
24
96
4
89
36
12
6
44
1.67
15990--16048
14
4.5
14
79
16
72
38
8
5
47
1.56
22405--22523
46
2.6
46
94
1
202
33
6
16
42
1.75
22828--22854
14
1.9
14
100
0
54
22
22
18
37
1.95
22704--23467
384
2.0
389
94
4
1342
30
11
19
39
1.87
34586--34618
3
11.0
3
93
0
57
63
0
0
36
0.95
36322--36369
3
14.7
3
95
4
60
39
0
0
60
0.97
40079--40156
34
2.2
36
88
9
115
33
11
16
38
1.85
45407--45447
2
20.5
2
100
0
82
51
48
0
0
1.00
47536--47563
2
14.0
2
100
0
56
50
0
0
50
1.00
47801--47834
5
6.6
5
86
6
50
0
14
0
85
0.60

Tables:   1

The End!