Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018008.1 Corchorus olitorius cultivar O-4 contig18041, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6449
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35


Found at i:1727 original size:18 final size:18

Alignment explanation


    Indices: 1700--1738  Score: 69
    Period size: 18  Copynumber: 2.2  Consensus size: 18

       1690 TAGAGGTTAA

                              
       1700 ACCTGAATTTAATTTGTT
          1 ACCTGAATTTAATTTGTT

                 *            
       1718 ACCTGGATTTAATTTGTT
          1 ACCTGAATTTAATTTGTT

               
       1736 ACC
          1 ACC

       1739 ACCATTGTTC


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.26, C:0.15, G:0.13, T:0.46


Consensus pattern (18 bp):   
ACCTGAATTTAATTTGTT

Found at i:3854 original size:18 final size:18

Alignment explanation


    Indices: 3831--3867  Score: 74
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       3821 TTTGGTTCAT

                              
       3831 TGAGTAGAAAGGTGGGAA
          1 TGAGTAGAAAGGTGGGAA

                              
       3849 TGAGTAGAAAGGTGGGAA
          1 TGAGTAGAAAGGTGGGAA

             
       3867 T
          1 T

       3868 ATGTAAGGAA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.38, C:0.00, G:0.43, T:0.19


Consensus pattern (18 bp):   
TGAGTAGAAAGGTGGGAA
Done.