Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018010.1 Corchorus olitorius cultivar O-4 contig18043, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7684
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35


Found at i:5151 original size:3 final size:3

Alignment explanation


    Indices: 5143--5183  Score: 82
    Period size: 3  Copynumber: 13.7  Consensus size: 3

       5133 CCTCTCTTTA

                                                                  
       5143 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
          1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT

       5184 GTCACCATTC


Statistics
Matches: 38,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   38  1.00

ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66


Consensus pattern (3 bp):   
ATT

Found at i:5356 original size:84 final size:84

Alignment explanation


    Indices: 5215--5384  Score: 313
    Period size: 84  Copynumber: 2.0  Consensus size: 84

       5205 TAGAGATGAA

                                                                             
       5215 TATGATAACATCTGTTTAACATTTAATCAAGTTCTCACCATCCTTTTTTGAAGTATTGCTCAAGA
          1 TATGATAACATCTGTTTAACATTTAATCAAGTTCTCACCATCCTTTTTTGAAGTATTGCTCAAGA

                  *            
       5280 AATACCTCATGGGGAAAAT
         66 AATACCGCATGGGGAAAAT

                                                      *                      
       5299 TATGATAACATCTGTTTAACATTTAATCAAGTTCTCACCATCTTTTTTTGAAGTATTGCTCAAGA
          1 TATGATAACATCTGTTTAACATTTAATCAAGTTCTCACCATCCTTTTTTGAAGTATTGCTCAAGA

            *                  
       5364 GATACCGCATGGGGAAAAT
         66 AATACCGCATGGGGAAAAT

              
       5383 TA
          1 TA

       5385 CAAGCTTCCT


Statistics
Matches: 83,  Mismatches: 3, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  84   83  1.00

ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36


Consensus pattern (84 bp):   
TATGATAACATCTGTTTAACATTTAATCAAGTTCTCACCATCCTTTTTTGAAGTATTGCTCAAGA
AATACCGCATGGGGAAAAT

Done.