Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018015.1 Corchorus olitorius cultivar O-4 contig18048, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40918

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
891--955
20
3.1
20
77
14
69
56
10
21
10
1.63
893--955
21
3.0
21
77
13
67
55
11
22
11
1.66
2499--2600
44
2.3
45
79
5
118
47
13
13
25
1.80
3541--3577
13
2.7
14
84
15
51
54
0
2
43
1.14
3541--3573
14
2.3
15
90
10
52
48
0
3
48
1.17
3476--3816
176
2.0
165
85
9
454
38
9
9
42
1.71
4035--4143
22
5.0
21
73
11
94
38
8
16
36
1.79
4227--4635
22
18.7
22
71
12
198
35
10
16
37
1.83
6046--6102
29
2.0
29
82
0
69
36
17
8
36
1.81
7691--7730
21
1.9
21
85
10
55
22
15
12
50
1.77
9188--9430
124
2.0
124
98
0
468
32
18
19
30
1.96
17496--17520
13
1.9
13
100
0
50
56
0
0
44
0.99
18036--18083
20
2.6
18
75
12
51
33
10
2
54
1.46
18225--18282
21
2.8
21
75
0
62
32
10
10
46
1.72
18477--18626
58
2.6
58
91
1
237
38
12
8
41
1.72
29510--29665
78
2.1
77
86
7
221
41
8
7
41
1.65
29590--29864
103
2.6
102
82
8
288
39
8
8
43
1.66
30183--30212
15
2.0
15
93
0
51
63
0
0
36
0.95
30227--30269
19
2.3
18
84
7
59
41
16
13
27
1.86
34698--35146
44
10.2
43
69
13
211
38
15
7
37
1.77
34888--34995
46
2.4
44
85
3
135
38
14
12
34
1.84
35025--35102
21
3.7
21
81
13
81
38
12
5
43
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35048--35152
21
4.9
20
77
13
86
36
16
4
42
1.69
34710--35151
22
20.0
22
70
14
169
38
16
7
37
1.77
35712--35808
27
3.6
27
80
5
90
14
14
26
44
1.84
35747--35808
26
2.3
26
88
2
88
14
11
27
46
1.78

Tables:   1

The End!