Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018016.1 Corchorus olitorius cultivar O-4 contig18049, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46935

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13050--13114
35
2.0
32
88
11
96
35
7
9
47
1.64
13403--13462
4
15.0
4
100
0
120
50
25
0
25
1.50
14848--14909
17
3.4
17
84
13
63
35
3
0
61
1.12
14843--14907
20
3.2
20
75
18
64
35
3
0
61
1.12
16352--16407
29
1.9
29
92
0
94
53
0
16
30
1.43
16553--16597
23
2.0
23
86
0
63
44
6
11
37
1.66
25802--25853
22
2.4
22
80
0
68
34
7
9
48
1.65
26148--26182
19
1.9
17
88
11
52
85
0
14
0
0.59
26150--26182
5
6.8
5
89
6
50
84
0
15
0
0.61
27533--27728
22
8.9
23
70
13
92
38
18
6
36
1.76
27865--28003
41
3.3
41
72
17
124
36
18
7
37
1.79
27865--28003
22
6.7
20
73
11
111
36
18
7
37
1.79
28163--28314
22
7.0
22
72
12
100
36
17
9
36
1.83
28354--28657
22
13.8
22
69
18
93
38
17
8
35
1.81
28478--28536
23
2.6
23
76
12
68
38
15
8
37
1.78
28557--28604
21
2.2
22
85
3
62
43
18
8
29
1.79
28557--28673
22
5.3
22
75
10
96
41
18
6
33
1.77
33228--33260
2
16.5
2
93
0
57
45
3
0
51
1.16
36535--36590
27
2.1
25
84
15
69
48
0
7
44
1.30
37040--37068
12
2.3
13
94
5
51
34
0
31
34
1.58
37193--37240
2
24.5
2
79
12
55
45
0
6
47
1.27
38723--38757
2
18.0
2
91
5
54
51
0
2
45
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43260--43353
45
2.2
43
84
7
120
41
20
4
34
1.72
45618--45672
28
2.0
27
86
10
76
12
10
27
49
1.74

Tables:   1

The End!