genome.fa.s18017.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018017.1 Corchorus olitorius cultivar O-4 contig18050, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129578

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30--107	40	1.9	41	89	2	122	42	15	14	28	1.85
210--240	13	2.4	13	94	0	53	38	6	41	12	1.69
824--949	64	2.0	64	98	0	243	30	13	20	35	1.91
2200--2233	14	2.3	15	90	10	52	26	2	5	64	1.30
5604--5650	26	1.9	24	87	12	69	27	27	4	40	1.75
21189--21238	9	5.9	9	86	13	79	0	20	0	80	0.72
21189--21238	15	3.1	15	84	15	73	0	20	0	80	0.72
24380--24665	41	6.8	43	76	8	248	39	26	11	22	1.88
24380--24657	84	3.3	85	85	7	381	39	26	10	23	1.87
24728--24752	2	12.5	2	100	0	50	48	0	0	52	1.00
28941--28984	21	2.1	21	86	0	61	13	40	9	36	1.76
29235--29309	19	3.9	18	78	16	71	41	0	1	57	1.07
29236--29309	10	7.5	10	68	24	50	41	0	1	56	1.07
29331--29481	32	4.7	32	93	3	259	12	40	28	18	1.87
31318--31485	31	5.4	31	82	0	174	18	22	25	33	1.97
31326--31485	62	2.6	62	84	0	212	18	22	25	33	1.97
34860--35895	22	47.0	22	68	11	325	27	18	12	41	1.87
34860--36192	66	20.3	65	69	12	534	27	18	13	40	1.87
35896--36119	22	10.0	22	69	10	105	28	19	13	39	1.89
35842--35952	57	1.9	57	90	0	177	27	22	11	38	1.89
36057--36193	44	3.1	44	74	8	136	29	16	15	39	1.89
36057--36193	22	6.3	22	77	15	90	29	16	15	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36781--36855	7	10.6	7	77	18	57	44	1	2	52	1.23
36774--36815	18	2.4	18	88	4	59	38	2	0	59	1.10
36924--37052	33	3.9	33	92	0	204	17	31	35	15	1.91
50362--50394	13	2.5	13	95	0	57	84	3	12	0	0.72
50516--50546	2	16.0	2	93	6	55	48	0	0	51	1.00
50517--50550	12	3.1	11	91	8	52	44	0	0	55	0.99
55912--55945	12	2.8	12	95	0	59	26	8	17	47	1.77
60798--60840	12	3.7	12	78	6	52	23	6	20	48	1.73
65516--65583	21	3.1	21	75	8	64	17	32	38	11	1.86
66608--66662	29	2.0	27	86	13	78	43	16	18	21	1.88
70728--70784	6	9.5	6	79	11	55	0	24	0	75	0.80
70728--70784	12	4.8	12	77	16	64	0	24	0	75	0.80
70720--70784	19	3.5	19	76	23	75	0	24	0	75	0.81
70717--70779	32	2.0	30	87	6	90	0	22	0	77	0.76
79261--79438	45	4.0	45	100	0	356	42	8	8	39	1.67
79451--79511	28	2.2	28	91	2	97	24	14	8	52	1.69
79513--79548	12	3.0	12	91	0	63	27	25	13	33	1.94
81054--81091	20	2.0	20	89	5	60	39	2	7	50	1.46
81338--81460	61	2.0	61	95	3	221	35	18	4	40	1.72
81338--81450	22	5.3	22	71	17	96	34	17	4	43	1.69
81444--81494	22	2.3	22	86	6	68	39	15	9	35	1.81
81463--82005	22	24.8	22	67	12	213	38	17	8	36	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81466--82383	44	20.9	44	69	13	318	35	18	8	36	1.82
81484--81587	46	2.3	44	85	6	129	39	14	10	35	1.81
81574--81625	21	2.4	22	75	9	54	38	15	9	36	1.80
81530--81959	85	4.9	84	71	13	259	37	17	7	37	1.78
81573--81803	63	3.6	62	74	10	191	36	17	6	38	1.77
82020--82064	22	2.0	22	91	0	72	44	15	4	35	1.67
82209--82335	66	1.9	66	82	3	157	34	15	11	38	1.83
82209--82383	22	8.0	21	74	15	142	32	18	10	38	1.85
82409--82538	22	6.0	22	73	12	117	42	16	5	36	1.71
82447--82552	22	4.9	21	71	13	72	43	16	6	33	1.73
83050--83093	21	2.1	21	100	0	88	36	0	9	54	1.32
83054--83098	21	2.1	21	87	4	63	40	2	11	46	1.52
89027--89062	16	2.2	16	100	0	72	36	19	16	27	1.93
89084--89146	29	2.2	27	83	10	81	20	28	14	36	1.92
93138--93172	15	2.3	15	100	0	70	11	20	11	57	1.64
107762--107833	29	2.5	30	88	11	114	16	9	13	59	1.60
112412--112445	16	2.1	16	100	0	68	38	0	17	44	1.49
119441--119491	19	2.7	19	77	14	61	47	0	1	50	1.12
126001--126114	21	5.4	21	91	2	158	28	16	27	27	1.97
125997--126114	42	2.8	42	89	2	175	29	16	27	27	1.97

Tables:   1

The End!