genome.fa.s18022.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018022.1 Corchorus olitorius cultivar O-4 contig18055, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25311

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
481--565	42	2.0	42	100	0	170	27	21	9	42	1.83
3477--3526	12	4.1	12	87	5	64	34	20	16	30	1.94
6065--6448	46	8.3	46	88	2	536	30	15	22	30	1.95
6065--6448	185	2.1	185	89	1	583	30	15	22	30	1.95
6635--6804	50	3.3	50	66	19	141	32	21	31	13	1.92
6621--6831	105	2.0	105	99	0	413	31	19	33	16	1.94
7237--7303	19	3.3	19	70	22	64	31	31	13	23	1.93
7218--7390	42	4.1	42	96	0	283	27	31	16	23	1.96
7256--7368	23	5.3	23	70	20	109	26	31	17	23	1.97
7272--7394	19	6.1	19	71	17	86	28	33	17	21	1.95
7439--7505	14	4.8	14	88	0	98	34	31	16	17	1.93
7427--7493	28	2.4	28	94	0	116	34	28	16	20	1.95
7427--7505	28	2.8	28	90	0	95	35	29	15	20	1.93
7543--7638	14	7.1	14	67	7	63	32	31	15	20	1.94
7520--7676	53	2.9	54	90	2	246	29	29	17	22	1.97
8096--8126	12	2.6	12	100	0	62	0	16	32	51	1.44
8626--8661	2	18.5	2	88	5	56	47	0	0	52	1.00
12466--12542	22	3.6	21	78	18	70	59	1	1	37	1.14
18625--18792	51	3.3	51	62	15	105	24	25	23	26	2.00
18558--18894	100	3.4	100	92	2	561	24	24	23	28	2.00
18751--19043	151	1.9	151	93	1	507	25	24	23	26	2.00
18887--19310	100	4.2	100	95	0	767	23	23	25	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18651--19143	251	2.0	251	93	0	835	24	24	23	27	2.00
19038--19294	49	5.2	48	61	17	112	21	23	27	27	1.99

Tables:   1

The End!