Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018026.1 Corchorus olitorius cultivar O-4 contig18059, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67372

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2560--2635
27
2.8
28
86
6
102
27
11
14
46
1.80
16387--16556
31
5.5
31
87
0
205
20
24
24
31
1.98
21898--21934
19
2.0
19
89
5
58
35
0
0
64
0.94
21904--21946
19
2.3
19
83
0
50
39
2
0
58
1.11
23089--23170
28
2.9
28
88
0
119
47
28
9
14
1.76
23635--23967
178
1.9
178
89
5
521
35
16
14
33
1.89
23635--24023
178
2.2
177
84
5
507
37
16
15
31
1.89
24796--24826
2
15.5
2
100
0
62
51
48
0
0
1.00
27295--27414
41
3.0
40
81
3
152
45
23
10
21
1.82
27290--27410
40
3.0
40
82
2
152
45
22
10
21
1.82
27688--27712
11
2.3
11
100
0
50
40
8
0
52
1.31
27645--27794
66
2.3
66
100
0
300
46
16
9
28
1.77
27754--27778
11
2.3
11
100
0
50
40
8
0
52
1.31
32103--32139
18
2.1
18
90
5
58
37
10
2
48
1.52
48389--48421
5
6.6
5
100
0
66
0
18
21
60
1.36
49072--49103
16
2.0
16
93
0
55
56
0
9
34
1.32
51261--51314
22
2.4
23
79
14
60
18
7
7
66
1.40
55637--55742
41
2.6
41
90
1
160
47
15
14
23
1.81
55649--55761
41
2.8
41
89
5
158
46
15
14
23
1.83
59223--59309
44
2.0
44
95
0
156
27
8
22
41
1.82
59525--59575
22
2.4
20
81
12
57
43
21
11
23
1.85
66037--66078
15
2.7
15
92
3
66
11
9
14
64
1.50

Tables:   1

The End!