Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018029.1 Corchorus olitorius cultivar O-4 contig18062, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11248
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27


Found at i:1293 original size:24 final size:24

Alignment explanation


    Indices: 1266--1313  Score: 87
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1256 CCAGGGTTTT

                               *    
       1266 GCCCTGACTAATCCGGATCTGACG
          1 GCCCTGACTAATCCGGATCCGACG

                                    
       1290 GCCCTGACTAATCCGGATCCGACG
          1 GCCCTGACTAATCCGGATCCGACG

       1314 CGCGTTGTGC


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   23  1.00

ACGTcount: A:0.21, C:0.35, G:0.25, T:0.19


Consensus pattern (24 bp):   
GCCCTGACTAATCCGGATCCGACG

Found at i:1757 original size:15 final size:16

Alignment explanation


    Indices: 1737--1769  Score: 59
    Period size: 15  Copynumber: 2.1  Consensus size: 16

       1727 GTCTAATGGC

                            
       1737 AAAAAGAAAAAA-AAA
          1 AAAAAGAAAAAAGAAA

                            
       1752 AAAAAGAAAAAAGAAA
          1 AAAAAGAAAAAAGAAA

              
       1768 AA
          1 AA

       1770 GATCAAAACT


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  15   12  0.71
  16    5  0.29

ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00


Consensus pattern (16 bp):   
AAAAAGAAAAAAGAAA
Done.