Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018030.1 Corchorus olitorius cultivar O-4 contig18063, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97519

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
564--630
34
2.0
34
93
0
116
32
19
16
31
1.94
1491--1592
28
3.7
27
80
2
105
37
26
17
18
1.93
1527--1592
27
2.4
27
87
2
87
37
28
16
16
1.91
2683--2737
23
2.4
23
78
6
58
16
23
12
47
1.81
2698--2762
22
2.9
23
77
11
64
18
23
13
44
1.85
2670--2771
45
2.3
44
77
13
100
15
25
15
43
1.86
3302--3363
23
2.7
23
87
5
81
20
33
37
8
1.83
3559--3597
6
6.5
6
85
11
53
71
0
0
28
0.86
13250--13294
21
2.1
21
83
4
54
17
22
46
13
1.83
16307--16380
31
2.4
31
95
0
130
32
32
16
18
1.93
17407--17450
22
2.0
23
83
16
58
25
18
31
25
1.97
28976--29011
18
2.1
18
89
5
56
41
8
5
44
1.58
33482--33512
16
2.0
15
93
6
53
45
12
3
38
1.59
37108--37143
11
3.2
11
88
7
54
33
5
16
44
1.71
37107--37149
12
3.7
12
87
6
61
34
6
16
41
1.75
43743--43788
22
2.1
21
88
4
65
17
39
28
15
1.90
47025--47067
12
3.7
12
84
6
52
32
6
18
41
1.77
47879--47954
31
2.5
31
84
4
100
34
17
18
30
1.94
48916--49024
49
2.3
48
90
3
166
33
5
14
45
1.68
51180--51215
1
36.0
1
100
0
72
0
0
0
100
0.00
57326--57375
22
2.3
22
86
13
68
66
12
6
16
1.43
63227--63288
25
2.5
25
91
0
97
43
4
22
29
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
84164--84215
19
2.8
18
77
8
59
48
0
1
50
1.12
84171--84213
22
1.9
22
85
4
59
44
0
2
53
1.13
87005--87044
6
7.0
6
88
11
66
0
0
17
82
0.67
87005--87044
11
3.5
11
96
3
71
0
0
17
82
0.67
90096--90135
10
4.2
9
81
12
53
45
2
0
52
1.14
91899--91925
2
13.5
2
100
0
54
0
0
48
51
1.00
92902--92928
2
13.5
2
100
0
54
48
0
0
51
1.00
93857--93882
2
13.0
2
100
0
52
50
0
0
50
1.00
94678--94758
2
41.5
2
82
4
103
48
2
1
48
1.23

Tables:   1

The End!