Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018031.1 Corchorus olitorius cultivar O-4 contig18064, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48365

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4504--4547
19
2.3
19
80
0
52
43
0
45
11
1.40
5336--5396
24
2.5
24
100
0
122
13
0
24
62
1.31
5336--5430
24
3.7
26
80
19
96
11
1
24
63
1.34
19618--19754
43
3.0
48
82
9
135
44
7
18
29
1.77
19634--20170
47
11.0
44
71
20
253
45
6
18
29
1.75
19790--19875
44
2.0
44
90
0
136
50
6
18
24
1.72
19834--20283
54
8.8
53
82
10
542
45
6
18
29
1.75
19663--20275
101
6.0
101
88
6
726
46
6
18
28
1.74
20109--20312
108
1.9
107
80
8
234
48
6
19
26
1.73
20909--20934
2
13.0
2
100
0
52
50
0
0
50
1.00
33421--33462
21
2.0
21
85
0
57
47
35
11
4
1.61
34571--34598
2
14.0
2
100
0
56
50
0
0
50
1.00
41979--42053
31
2.4
31
84
0
105
37
13
18
30
1.89
43941--44005
31
2.1
31
91
0
103
32
12
16
38
1.86
44952--45026
31
2.4
31
81
0
87
33
20
10
36
1.87
45548--45597
26
1.9
26
87
0
73
56
16
8
20
1.65

Tables:   1

The End!