Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018032.1 Corchorus olitorius cultivar O-4 contig18065, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5450
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.35


Found at i:1528 original size:97 final size:96

Alignment explanation


    Indices: 1390--1571  Score: 285
    Period size: 97  Copynumber: 1.9  Consensus size: 96

       1380 ATAATTAATA

                         *                                                   
       1390 AAAGTATTTTCATTTGCTTATAATAAATTAATTACCTTAATTTGCATATGATTTAATCTATTCCA
          1 AAAGTATTTTCATCTGCTTATAATAAATTAATTACCTTAATTTGCATATGATTTAATCTATTCCA

                       *                   
       1455 CCTAAATTTTTTAGAAAACCTGGATAAAAAT
         66 CCTAAATTTTTGAGAAAACCTGGATAAAAAT

                                                *            *       *      *
       1486 AAAGTA-TTTCAATCTGCTTATAATAATATTAATTATCTTAATTTGCATTTGATTTATTCTATTT
          1 AAAGTATTTTC-ATCTGCTTATAATAA-ATTAATTACCTTAATTTGCATATGATTTAATCTATTC

                                  
       1550 CACCTAAATTTTTGAGAAAACC
         64 CACCTAAATTTTTGAGAAAACC

       1572 ATCGAATAAA


Statistics
Matches: 78,  Mismatches: 6, Indels: 3
        0.90            0.07        0.03

Matches are distributed among these distances:
  95    4  0.05
  96   20  0.26
  97   54  0.69

ACGTcount: A:0.37, C:0.13, G:0.07, T:0.43


Consensus pattern (96 bp):   
AAAGTATTTTCATCTGCTTATAATAAATTAATTACCTTAATTTGCATATGATTTAATCTATTCCA
CCTAAATTTTTGAGAAAACCTGGATAAAAAT
Done.