Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018034.1 Corchorus olitorius cultivar O-4 contig18067, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54162

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
151--219
31
2.2
31
92
0
111
33
13
15
37
1.86
2894--2923
16
1.9
15
93
6
51
33
0
16
50
1.46
8748--8773
9
2.9
9
100
0
52
88
11
0
0
0.52
18437--19149
67
10.7
66
81
7
755
21
18
17
42
1.89
18446--19143
134
5.2
134
87
5
902
21
18
17
42
1.89
18445--19143
267
2.6
264
85
6
930
21
18
17
42
1.89
29431--29466
17
2.1
17
100
0
72
44
16
11
27
1.82
29465--29727
132
2.0
132
99
0
517
35
16
16
31
1.91
29704--29755
25
2.1
25
85
0
68
38
13
9
38
1.77
32692--32716
7
3.6
7
100
0
50
32
0
12
56
1.36
35977--36074
31
3.2
30
74
8
92
34
20
14
30
1.92
42419--42460
21
2.0
21
86
9
59
47
35
0
16
1.47
43795--43879
33
2.8
30
80
16
86
35
4
2
57
1.32
48030--48069
19
2.1
19
95
0
71
25
12
5
57
1.55

Tables:   1

The End!