genome.fa.s18035.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018035.1 Corchorus olitorius cultivar O-4 contig18068, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82340

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5836--6584	187	4.0	185	91	3	1216	42	10	16	30	1.82
5834--6593	372	2.0	370	92	1	1272	42	10	16	30	1.81
9091--9120	11	2.7	11	89	0	51	33	6	23	36	1.81
13565--13594	11	2.7	11	89	0	51	33	6	23	36	1.81
14626--14725	32	3.1	32	72	2	94	20	36	26	18	1.95
15729--15761	14	2.3	15	89	5	50	33	3	0	63	1.10
16798--16894	45	2.2	45	88	1	142	37	4	20	38	1.72
18932--19041	33	3.4	32	82	6	116	38	20	18	22	1.94
18932--19066	32	4.2	32	81	6	148	36	20	20	23	1.95
21169--21523	30	11.7	30	91	1	449	32	20	17	29	1.96
21169--21523	121	2.9	121	86	1	469	32	20	17	29	1.96
23669--23732	33	1.9	33	87	0	92	31	23	20	25	1.98
25405--25717	119	2.6	123	79	10	349	23	19	19	37	1.94
26900--26948	25	2.0	25	88	7	75	38	8	12	40	1.72
28740--28773	15	2.3	15	100	0	68	41	26	5	26	1.78
37402--37713	125	2.6	117	81	9	319	39	18	19	23	1.92
40988--41172	30	6.2	30	91	1	282	34	19	15	30	1.93
41559--41627	35	1.9	36	88	5	104	36	17	8	37	1.81
42889--42987	49	2.0	49	94	0	171	29	17	9	44	1.79
47569--47599	16	1.9	16	93	0	53	41	6	35	16	1.74
48752--48777	11	2.4	11	100	0	52	0	7	0	92	0.39
54290--54384	46	2.2	41	83	12	113	44	30	2	23	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65369--65418	21	2.3	22	89	3	75	16	12	2	70	1.26
67387--67430	17	2.6	17	92	0	70	72	4	11	11	1.25
67535--67572	20	1.9	20	94	0	67	21	10	15	52	1.72
69437--69516	42	1.9	42	92	0	133	42	21	5	31	1.74
69590--70179	295	2.0	293	90	0	919	42	16	16	24	1.88
72274--72803	251	2.1	253	96	0	974	26	20	18	34	1.96
73216--73244	14	2.0	15	93	6	51	37	0	0	62	0.96
77251--77311	20	3.0	21	85	7	90	29	40	18	11	1.85
78471--78558	42	2.0	45	86	8	128	29	12	13	44	1.81
79810--79869	30	2.0	30	83	6	77	56	3	18	21	1.55
80038--80194	72	2.1	74	85	7	210	31	12	20	35	1.89
81923--81960	20	1.9	20	88	0	58	21	50	7	21	1.74
81931--81969	21	1.9	20	84	5	51	15	51	12	20	1.76

Tables:   1

The End!