Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018036.1 Corchorus olitorius cultivar O-4 contig18069, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58595

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
412--449
20
1.9
20
88
0
58
23
7
44
23
1.79
4000--4390
193
2.0
195
91
2
635
25
20
6
47
1.74
13698--13724
4
6.8
4
100
0
54
77
0
22
0
0.76
24648--24712
31
2.1
31
97
0
121
20
15
21
43
1.88
28262--28311
9
5.2
10
82
17
54
2
26
0
72
0.96
28702--28863
57
2.8
55
77
9
146
30
20
22
26
1.98
28867--29034
90
1.9
90
88
0
255
38
21
18
21
1.93
28867--29039
30
5.8
30
88
0
229
38
20
19
20
1.93
29526--29566
21
2.0
21
100
0
82
68
4
26
0
1.10
32625--32662
9
4.2
9
87
12
51
0
13
7
78
0.94
34757--34783
5
5.4
5
100
0
54
40
0
18
40
1.51
39762--39791
12
2.4
13
88
11
53
46
0
0
53
1.00
40594--40624
7
4.4
7
100
0
62
29
12
12
45
1.80
42870--42895
2
13.0
2
100
0
52
50
0
0
50
1.00
43315--43344
15
2.0
15
93
0
51
0
16
0
83
0.65
45195--45235
21
1.9
22
90
5
66
48
9
21
19
1.77
50366--50459
45
2.2
43
84
7
120
37
21
5
36
1.76
54522--54559
20
2.1
18
85
14
51
39
10
21
28
1.86
55657--55842
22
8.5
22
73
7
110
35
15
9
39
1.80
55657--55759
43
2.4
45
82
8
115
38
13
10
36
1.80
55816--55867
22
2.4
22
83
0
68
25
17
11
46
1.81

Tables:   1

The End!