Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018037.1 Corchorus olitorius cultivar O-4 contig18070, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27178

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
675--712
18
2.1
19
90
5
60
36
7
2
52
1.45
6833--6872
21
2.0
21
90
5
64
57
10
7
25
1.57
6898--6970
22
3.4
21
75
9
67
45
9
13
31
1.76
6898--6948
22
2.4
22
86
3
68
49
7
11
31
1.68
7252--7295
20
2.1
21
84
12
56
50
9
6
34
1.61
7360--7538
85
2.1
86
91
1
297
49
6
11
32
1.65
7564--7616
20
2.5
20
78
9
52
56
9
7
26
1.57
7929--8000
21
3.3
21
81
7
81
50
8
13
27
1.71
9432--9473
4
10.2
4
89
5
66
26
2
0
71
0.98
11582--11626
22
2.0
22
100
0
90
51
4
4
40
1.42
13567--13645
31
2.7
29
81
13
90
29
31
15
24
1.95
13926--13969
20
2.1
21
87
4
63
6
15
4
72
1.22
13933--13991
27
2.2
27
85
8
77
3
18
3
74
1.10
15596--15647
26
2.0
26
85
10
72
32
9
17
40
1.82

Tables:   1

The End!