Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018038.1 Corchorus olitorius cultivar O-4 contig18071, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35787

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
701--730
15
2.1
14
93
6
51
33
0
0
66
0.92
1587--2151
284
2.0
284
99
0
1121
30
23
11
33
1.91
5991--6971
44
22.9
43
65
20
181
38
8
16
35
1.80
5991--6143
22
7.0
21
76
10
146
36
10
17
35
1.84
5987--6204
66
3.3
66
83
6
226
33
9
18
38
1.82
5991--6175
22
8.3
22
75
11
110
35
9
17
37
1.82
6227--6595
22
16.6
22
66
17
124
39
9
16
35
1.80
6634--7233
22
27.8
21
65
16
160
39
9
16
35
1.80
6938--6980
21
2.0
21
86
0
59
34
11
18
34
1.87
7199--7253
22
2.5
22
82
5
58
47
5
12
34
1.65
11193--11572
188
2.0
188
97
0
724
30
25
17
26
1.97
14187--14231
21
2.0
21
87
8
63
0
8
11
80
0.92
14194--14239
22
2.1
22
84
8
58
0
8
15
76
1.02
15845--15894
17
2.9
17
81
3
55
76
0
8
16
1.02
17465--17506
21
2.0
21
95
0
75
21
19
14
45
1.85
22652--22694
7
5.8
8
83
10
56
0
11
0
88
0.52
22652--22693
10
4.3
10
87
6
68
0
9
0
90
0.45
22658--22693
11
3.4
11
92
7
65
0
8
0
91
0.41
27025--27190
90
1.8
90
90
0
269
34
12
16
36
1.86
27392--27435
22
2.0
22
100
0
88
50
4
18
27
1.66
31293--31351
31
1.9
31
89
0
91
50
22
15
11
1.76
32751--32801
26
2.0
26
84
7
68
29
1
5
62
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34023--34062
21
2.1
19
86
13
55
20
27
15
37
1.92
34033--35324
639
2.0
644
95
1
2324
29
16
14
39
1.88

Tables:   1

The End!