Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001804.1 Corchorus olitorius cultivar O-4 contig01804, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 990

Length: 1650
ACGTcount: A:0.34, C:0.21, G:0.12, T:0.33


Found at i:781 original size:51 final size:51

Alignment explanation


    Indices: 725--825  Score: 116
    Period size: 51  Copynumber: 2.0  Consensus size: 51

        715 TTTTTAATTT

                               *                   *             
        725 AAAC-TTACCAAAACTTAATCTTTCTGAACTCAAAGATCCTA-TTTTATTTAA
          1 AAACTTTACCAAAACTTAAACTTT-TGAACT-AAAGATCATATTTTTATTTAA

                   *    * *          *                        
        776 AAACTTTGCCAAGATTTAAACTTTTTAACTAAAGATCATATTTTTATTTA
          1 AAACTTTACCAAAACTTAAACTTTTGAACTAAAGATCATATTTTTATTTA

        826 TTAAACCTTA


Statistics
Matches: 42,  Mismatches: 6, Indels: 4
        0.81            0.12        0.08

Matches are distributed among these distances:
  50    9  0.21
  51   18  0.43
  52   15  0.36

ACGTcount: A:0.39, C:0.16, G:0.05, T:0.41


Consensus pattern (51 bp):   
AAACTTTACCAAAACTTAAACTTTTGAACTAAAGATCATATTTTTATTTAA
Done.