Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018040.1 Corchorus olitorius cultivar O-4 contig18073, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97604

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5--42
2
19.0
2
100
0
76
50
0
0
50
1.00
748--775
13
2.2
13
100
0
56
64
0
7
28
1.20
1261--1560
115
2.6
115
77
9
288
40
20
14
26
1.90
1230--1554
117
2.8
116
78
6
354
40
19
13
26
1.89
2166--2195
14
2.1
14
100
0
60
36
6
13
43
1.70
3201--3229
14
2.0
15
93
6
51
75
0
24
0
0.80
14265--14337
36
2.0
36
100
0
146
39
16
16
27
1.90
15346--15429
41
2.0
41
97
0
159
45
23
11
19
1.83
22516--22544
13
2.3
13
94
5
51
86
0
13
0
0.58
24478--24502
13
1.9
13
100
0
50
52
0
0
48
1.00
27439--27525
43
2.0
43
100
0
174
22
9
22
44
1.81
28875--28949
39
1.9
39
97
0
141
48
13
10
28
1.75
35019--35072
19
3.1
18
84
12
76
38
11
18
31
1.86
35022--35073
16
3.1
16
88
8
68
36
9
19
34
1.84
35205--35241
19
1.9
19
100
0
74
32
13
37
16
1.87
35260--35299
2
20.5
2
94
5
73
50
0
0
50
1.00
35729--35754
13
2.0
13
100
0
52
53
0
0
46
1.00
49205--49252
21
2.3
20
96
3
87
18
14
0
66
1.25
49303--49335
17
1.9
17
93
0
57
39
6
18
36
1.75
49708--49778
32
2.1
34
89
7
119
23
28
25
22
2.00
49825--49867
23
2.0
21
82
17
52
46
4
16
32
1.67
54022--54056
17
2.1
17
100
0
70
11
17
11
60
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55180--55256
29
2.7
29
97
0
145
24
12
22
40
1.89
60590--60629
14
2.9
14
92
0
62
40
2
45
12
1.56
60846--60885
19
2.1
19
90
0
62
17
5
25
52
1.64
61494--61534
20
2.0
20
95
0
73
39
24
9
26
1.86
62613--63189
69
8.4
69
90
2
903
26
16
29
27
1.97
64522--64672
51
3.0
51
84
4
193
34
15
19
31
1.92
66783--67127
4
89.0
4
65
15
84
25
8
0
64
1.28
66803--66864
19
3.3
19
80
11
74
27
8
0
64
1.21
66789--67025
44
5.3
44
84
8
275
26
7
0
65
1.22
66789--67037
88
2.8
89
83
6
310
26
7
0
65
1.22
66928--66988
11
5.5
11
75
14
54
24
6
0
68
1.13
66936--67036
32
2.9
35
77
14
102
27
3
0
67
1.15
66992--67038
19
2.5
19
82
3
60
34
2
2
61
1.20
67053--67170
8
15.0
8
69
15
50
24
11
0
63
1.32
71192--71248
21
2.7
21
72
0
60
43
14
33
8
1.76
71791--72031
4
62.8
4
65
16
91
25
7
0
66
1.22
71812--72121
8
38.6
8
66
21
64
24
9
1
64
1.31
71796--72034
19
12.5
19
66
23
112
25
7
0
66
1.22
71797--72034
44
5.5
44
87
5
306
25
7
0
66
1.23
71797--72004
84
2.4
87
86
7
289
25
7
0
66
1.21
71950--72064
32
3.3
34
76
15
110
25
7
1
65
1.29
72049--72107
24
2.5
24
86
5
84
23
18
1
55
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72101--72129
12
2.4
12
100
0
58
17
0
0
82
0.66
72696--72746
26
1.9
27
84
11
70
7
9
0
82
0.85
72694--72757
12
5.1
12
77
9
65
9
7
0
82
0.83
72710--72760
20
2.5
20
83
6
57
11
5
0
82
0.83
73136--73281
76
1.9
74
86
5
204
31
19
11
37
1.87
74823--74864
21
2.0
22
85
4
59
35
14
28
21
1.92
78493--78532
14
2.9
14
96
0
71
40
0
45
15
1.46
78845--78886
16
2.6
16
96
0
75
7
19
38
35
1.79
79483--79522
19
2.1
19
85
0
53
17
5
22
55
1.61
80138--80176
20
2.0
20
94
0
69
41
20
10
28
1.85
93261--93307
24
2.0
24
83
8
60
68
0
0
31
0.90
94169--94207
15
2.6
15
87
0
51
48
0
0
51
1.00
95297--95338
17
2.5
17
88
7
59
45
0
0
54
0.99
95294--95332
21
1.9
20
89
5
60
46
0
0
53
1.00

Tables:   1

The End!