genome.fa.s18042.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018042.1 Corchorus olitorius cultivar O-4 contig18075, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76900

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
736--823	10	8.0	10	75	15	59	77	0	19	3	0.91
736--817	5	16.0	5	71	16	53	76	0	20	2	0.89
3734--3775	15	2.8	16	78	10	52	16	35	19	28	1.93
7096--7121	13	2.0	13	100	0	52	7	46	46	0	1.31
7140--7205	12	5.2	12	81	13	51	74	0	25	0	0.82
7145--7212	18	3.8	18	82	7	86	73	0	26	0	0.83
7165--7211	12	3.9	12	97	0	85	70	0	29	0	0.88
27947--27989	19	2.3	18	84	4	50	13	16	9	60	1.58
30643--30812	45	3.8	45	92	0	270	41	9	14	34	1.78
32924--32977	19	2.6	21	77	19	60	38	3	18	38	1.69
36164--36202	20	2.0	20	89	0	60	41	5	12	41	1.65
37966--38219	65	3.9	65	82	5	298	34	13	24	26	1.93
39018--39059	21	2.0	22	95	4	77	57	23	2	16	1.51
41792--41848	29	2.0	29	89	0	87	12	10	33	43	1.76
41798--41860	29	2.2	29	85	0	81	11	11	34	42	1.76
56145--56224	42	1.9	42	84	0	106	18	46	23	11	1.81
59554--59708	52	3.0	52	91	1	240	26	21	15	36	1.93
59685--59788	36	2.9	38	79	13	121	25	17	19	38	1.93
59692--59788	37	2.7	36	85	6	133	26	16	19	37	1.93
61316--61470	52	3.0	52	93	0	247	27	20	14	37	1.92
61447--61549	36	2.9	35	89	4	161	28	16	16	38	1.90
62971--63000	14	2.1	14	93	0	51	66	6	3	23	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63078--63232	52	3.0	52	89	0	238	27	21	14	36	1.92
63209--63311	36	2.9	37	87	7	151	29	16	15	38	1.89
63209--63323	36	3.2	35	84	7	142	31	16	14	37	1.89
70062--70213	76	2.0	76	83	5	191	17	28	28	25	1.97
71248--71305	3	19.3	3	100	0	116	32	0	0	67	0.91
76213--76252	20	2.0	20	85	0	53	82	0	17	0	0.67
76215--76250	17	2.1	17	89	0	54	83	0	16	0	0.65

Tables:   1

The End!